miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23766 3' -60 NC_005261.1 + 27355 0.69 0.539373
Target:  5'- gGAGCGGC-GcCG-GACCGGcGcGAGGCCGg -3'
miRNA:   3'- -UUCGCUGaC-GCaCUGGCU-C-CUCCGGC- -5'
23766 3' -60 NC_005261.1 + 74809 0.68 0.559066
Target:  5'- ---aGGCccGCGUGGCgGAGGuGGCCGc -3'
miRNA:   3'- uucgCUGa-CGCACUGgCUCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 321 0.68 0.559066
Target:  5'- cGGCGGCUGCGgcggcGGCUGcGGcGGCCc -3'
miRNA:   3'- uUCGCUGACGCa----CUGGCuCCuCCGGc -5'
23766 3' -60 NC_005261.1 + 117910 0.68 0.559066
Target:  5'- uGAGCGGCUGCGcggGAaCGA--AGGCCGg -3'
miRNA:   3'- -UUCGCUGACGCa--CUgGCUccUCCGGC- -5'
23766 3' -60 NC_005261.1 + 137992 0.68 0.559066
Target:  5'- cGGCGGCUGCGgcggcGGCUGcGGcGGCCc -3'
miRNA:   3'- uUCGCUGACGCa----CUGGCuCCuCCGGc -5'
23766 3' -60 NC_005261.1 + 112669 0.68 0.568989
Target:  5'- cGAGCGGCUggagcGCGaggGGCUGGGcgucGAGGCCGu -3'
miRNA:   3'- -UUCGCUGA-----CGCa--CUGGCUC----CUCCGGC- -5'
23766 3' -60 NC_005261.1 + 23833 0.68 0.568989
Target:  5'- cGGGcCGGCUaGgGUGggcucGCCGGGGcAGGCCGg -3'
miRNA:   3'- -UUC-GCUGA-CgCAC-----UGGCUCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 23776 0.68 0.568989
Target:  5'- cGGGcCGGCUaGgGUGggcucGCCGGGGcAGGCCGg -3'
miRNA:   3'- -UUC-GCUGA-CgCAC-----UGGCUCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 101475 0.68 0.585954
Target:  5'- cGGCGGCgGCGUGAUgcgcagcagguucuUGAGGuuGGCCa -3'
miRNA:   3'- uUCGCUGaCGCACUG--------------GCUCCu-CCGGc -5'
23766 3' -60 NC_005261.1 + 74901 0.68 0.588959
Target:  5'- cGGCGGCccGCGcUGGCCGcgcggGGGAGGgCGa -3'
miRNA:   3'- uUCGCUGa-CGC-ACUGGC-----UCCUCCgGC- -5'
23766 3' -60 NC_005261.1 + 1048 0.68 0.588959
Target:  5'- cGGGCGGCgGCGUuagcGGCgCGGGG-GGCUGg -3'
miRNA:   3'- -UUCGCUGaCGCA----CUG-GCUCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 104279 0.68 0.60905
Target:  5'- cGGCGGCUGCGcgGGCCucGcAGGCCc -3'
miRNA:   3'- uUCGCUGACGCa-CUGGcuCcUCCGGc -5'
23766 3' -60 NC_005261.1 + 13413 0.68 0.610057
Target:  5'- aGGGCGACgcgaaggcgcaccgcGCGUcGACCGggugcAGGcAGGCCGg -3'
miRNA:   3'- -UUCGCUGa--------------CGCA-CUGGC-----UCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 30466 0.67 0.619124
Target:  5'- gGGGgGACgGgGggGA-CGAGGAGGCCGg -3'
miRNA:   3'- -UUCgCUGaCgCa-CUgGCUCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 32328 0.67 0.629208
Target:  5'- -cGCGGCgcccgGCGUGGCCuGGGAcgcggaccagGGCCc -3'
miRNA:   3'- uuCGCUGa----CGCACUGGcUCCU----------CCGGc -5'
23766 3' -60 NC_005261.1 + 128101 0.67 0.629208
Target:  5'- cGGGCGAgCgGCGcGGCgCGGGGucGGGCCGa -3'
miRNA:   3'- -UUCGCU-GaCGCaCUG-GCUCC--UCCGGC- -5'
23766 3' -60 NC_005261.1 + 49657 0.67 0.629208
Target:  5'- cGAGCGACUG-GUacACCGAGaccaugucGGGGCCGu -3'
miRNA:   3'- -UUCGCUGACgCAc-UGGCUC--------CUCCGGC- -5'
23766 3' -60 NC_005261.1 + 125709 0.67 0.629208
Target:  5'- cGGCGACggccgccGCGggcucggcuggGGCCGccgcaAGGGGGCCGg -3'
miRNA:   3'- uUCGCUGa------CGCa----------CUGGC-----UCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 136612 0.67 0.629208
Target:  5'- gGAGCGGCgcGCGcGcGCCGAGGGcGGCgGg -3'
miRNA:   3'- -UUCGCUGa-CGCaC-UGGCUCCU-CCGgC- -5'
23766 3' -60 NC_005261.1 + 63797 0.67 0.639294
Target:  5'- -cGCGGCUGCGUGAgcgugaacCCGAcGccGCCGa -3'
miRNA:   3'- uuCGCUGACGCACU--------GGCUcCucCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.