miRNA display CGI

Results 61 - 67 of 67 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23766	3'	-60	NC_005261.1	+	424	0.66	0.709293
	Target:  5'- -cGCGACgggGUGcccacgGACCGGgacggggacGGGGGCCGc -3' miRNA:   3'- uuCGCUGa--CGCa-----CUGGCU---------CCUCCGGC- -5'
23766	3'	-60	NC_005261.1	+	135304	0.66	0.719107
	Target:  5'- -cGCGACcgGCGUGucGCCcuGGGcGGCCGu -3' miRNA:   3'- uuCGCUGa-CGCAC--UGGc-UCCuCCGGC- -5'
23766	3'	-60	NC_005261.1	+	14749	0.66	0.719107
	Target:  5'- gGGGCGAUcgGCGccgcGCCGcgacaGGGGGGCCGc -3' miRNA:   3'- -UUCGCUGa-CGCac--UGGC-----UCCUCCGGC- -5'
23766	3'	-60	NC_005261.1	+	31694	0.66	0.728849
	Target:  5'- cGGCGGCUGauCGUGAUCGAcgccguGGAccccgcgaacuGGCCGc -3' miRNA:   3'- uUCGCUGAC--GCACUGGCU------CCU-----------CCGGC- -5'
23766	3'	-60	NC_005261.1	+	45171	0.66	0.728849
	Target:  5'- -uGCGAC-GCGUaccgcGCCGAGuguGAGGCCa -3' miRNA:   3'- uuCGCUGaCGCAc----UGGCUC---CUCCGGc -5'
23766	3'	-60	NC_005261.1	+	49201	0.66	0.728849
	Target:  5'- cGGcCGACaGCGaGGgCG-GGAGGCCGg -3' miRNA:   3'- uUC-GCUGaCGCaCUgGCuCCUCCGGC- -5'
23766	3'	-60	NC_005261.1	+	110795	0.66	0.728849
	Target:  5'- cGGGgGACgGCG-GG-CGAGGAGGCgGg -3' miRNA:   3'- -UUCgCUGaCGCaCUgGCUCCUCCGgC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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