miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23766 3' -60 NC_005261.1 + 321 0.68 0.559066
Target:  5'- cGGCGGCUGCGgcggcGGCUGcGGcGGCCc -3'
miRNA:   3'- uUCGCUGACGCa----CUGGCuCCuCCGGc -5'
23766 3' -60 NC_005261.1 + 424 0.66 0.709293
Target:  5'- -cGCGACgggGUGcccacgGACCGGgacggggacGGGGGCCGc -3'
miRNA:   3'- uuCGCUGa--CGCa-----CUGGCU---------CCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 1048 0.68 0.588959
Target:  5'- cGGGCGGCgGCGUuagcGGCgCGGGG-GGCUGg -3'
miRNA:   3'- -UUCGCUGaCGCA----CUG-GCUCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 2787 0.72 0.353286
Target:  5'- cGAGgGGCUGCcgccggcGGCCGGGaGGGGCCGg -3'
miRNA:   3'- -UUCgCUGACGca-----CUGGCUC-CUCCGGC- -5'
23766 3' -60 NC_005261.1 + 6433 0.66 0.709293
Target:  5'- -cGCGAggGCG-GuCCGGGGGccGGCCGg -3'
miRNA:   3'- uuCGCUgaCGCaCuGGCUCCU--CCGGC- -5'
23766 3' -60 NC_005261.1 + 13413 0.68 0.610057
Target:  5'- aGGGCGACgcgaaggcgcaccgcGCGUcGACCGggugcAGGcAGGCCGg -3'
miRNA:   3'- -UUCGCUGa--------------CGCA-CUGGC-----UCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 14749 0.66 0.719107
Target:  5'- gGGGCGAUcgGCGccgcGCCGcgacaGGGGGGCCGc -3'
miRNA:   3'- -UUCGCUGa-CGCac--UGGC-----UCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 14974 0.73 0.316149
Target:  5'- gGGGCGACUGCGcGGCCGcGccGGCCGc -3'
miRNA:   3'- -UUCGCUGACGCaCUGGCuCcuCCGGC- -5'
23766 3' -60 NC_005261.1 + 15958 0.66 0.709293
Target:  5'- gGGGCGAgUgGCG-GGCgGGGGAGGgcCCGg -3'
miRNA:   3'- -UUCGCUgA-CGCaCUGgCUCCUCC--GGC- -5'
23766 3' -60 NC_005261.1 + 16172 0.69 0.538394
Target:  5'- uAGGgGGCgcggGCGUGGCgGGGGugggcggGGGCCGc -3'
miRNA:   3'- -UUCgCUGa---CGCACUGgCUCC-------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 23776 0.68 0.568989
Target:  5'- cGGGcCGGCUaGgGUGggcucGCCGGGGcAGGCCGg -3'
miRNA:   3'- -UUC-GCUGA-CgCAC-----UGGCUCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 23833 0.68 0.568989
Target:  5'- cGGGcCGGCUaGgGUGggcucGCCGGGGcAGGCCGg -3'
miRNA:   3'- -UUC-GCUGA-CgCAC-----UGGCUCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 24925 0.72 0.385146
Target:  5'- cGGCGGCUGCaGccGCCGAGGggcAGGCUGg -3'
miRNA:   3'- uUCGCUGACG-CacUGGCUCC---UCCGGC- -5'
23766 3' -60 NC_005261.1 + 27355 0.69 0.539373
Target:  5'- gGAGCGGC-GcCG-GACCGGcGcGAGGCCGg -3'
miRNA:   3'- -UUCGCUGaC-GCaCUGGCU-C-CUCCGGC- -5'
23766 3' -60 NC_005261.1 + 28832 0.7 0.491282
Target:  5'- gAGGCGGCcGCG--GCUGAGGcGGCCGu -3'
miRNA:   3'- -UUCGCUGaCGCacUGGCUCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 30179 0.7 0.463396
Target:  5'- -cGCG-CUGCGc-GCCGAGGcGGCCGc -3'
miRNA:   3'- uuCGCuGACGCacUGGCUCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 30466 0.67 0.619124
Target:  5'- gGGGgGACgGgGggGA-CGAGGAGGCCGg -3'
miRNA:   3'- -UUCgCUGaCgCa-CUgGCUCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 31694 0.66 0.728849
Target:  5'- cGGCGGCUGauCGUGAUCGAcgccguGGAccccgcgaacuGGCCGc -3'
miRNA:   3'- uUCGCUGAC--GCACUGGCU------CCU-----------CCGGC- -5'
23766 3' -60 NC_005261.1 + 32328 0.67 0.629208
Target:  5'- -cGCGGCgcccgGCGUGGCCuGGGAcgcggaccagGGCCc -3'
miRNA:   3'- uuCGCUGa----CGCACUGGcUCCU----------CCGGc -5'
23766 3' -60 NC_005261.1 + 32983 0.66 0.709293
Target:  5'- gGAGgGACcGCG-GAg-GAGGGGGCCGa -3'
miRNA:   3'- -UUCgCUGaCGCaCUggCUCCUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.