Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23766 | 3' | -60 | NC_005261.1 | + | 34296 | 0.7 | 0.491282 |
Target: 5'- cGGgGACgccgggaGCGaGACCGAcggGGAGGCCGa -3' miRNA: 3'- uUCgCUGa------CGCaCUGGCU---CCUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 34682 | 0.66 | 0.689483 |
Target: 5'- cAGCGcGCUGCGUGACgGu--GGGCCc -3' miRNA: 3'- uUCGC-UGACGCACUGgCuccUCCGGc -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 35310 | 0.67 | 0.639294 |
Target: 5'- cGGGCcgGGCUGC----UCGGGGAGGCCGg -3' miRNA: 3'- -UUCG--CUGACGcacuGGCUCCUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 35719 | 0.67 | 0.639294 |
Target: 5'- cGGUGGCgGCcccGGCCGAGGccaccuGGGCCGa -3' miRNA: 3'- uUCGCUGaCGca-CUGGCUCC------UCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 35764 | 0.71 | 0.418851 |
Target: 5'- aAGGCGGCU-CG-GGCCGAgacaGGAGGCCc -3' miRNA: 3'- -UUCGCUGAcGCaCUGGCU----CCUCCGGc -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 39358 | 0.66 | 0.709293 |
Target: 5'- cGGCGGCaGCcgccucaucgGcGGCCGGGGAGGgCGg -3' miRNA: 3'- uUCGCUGaCG----------CaCUGGCUCCUCCgGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 45171 | 0.66 | 0.728849 |
Target: 5'- -uGCGAC-GCGUaccgcGCCGAGuguGAGGCCa -3' miRNA: 3'- uuCGCUGaCGCAc----UGGCUC---CUCCGGc -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 48337 | 0.7 | 0.445272 |
Target: 5'- gGGGCGcGCgcgGCGaGGCCGAGGAG-CCGg -3' miRNA: 3'- -UUCGC-UGa--CGCaCUGGCUCCUCcGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 49201 | 0.66 | 0.728849 |
Target: 5'- cGGcCGACaGCGaGGgCG-GGAGGCCGg -3' miRNA: 3'- uUC-GCUGaCGCaCUgGCuCCUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 49657 | 0.67 | 0.629208 |
Target: 5'- cGAGCGACUG-GUacACCGAGaccaugucGGGGCCGu -3' miRNA: 3'- -UUCGCUGACgCAc-UGGCUC--------CUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 52731 | 0.66 | 0.709293 |
Target: 5'- -uGCGGCgccgcgGCGcGAUCGGGGAaguGGCCc -3' miRNA: 3'- uuCGCUGa-----CGCaCUGGCUCCU---CCGGc -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 53592 | 0.73 | 0.316149 |
Target: 5'- cGGCGGCgccccaGCG-GACCGAcGAGGCCGu -3' miRNA: 3'- uUCGCUGa-----CGCaCUGGCUcCUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 56135 | 0.66 | 0.709293 |
Target: 5'- aGGGCGGgggGCGcgGGCCGAGGGuGGCgGc -3' miRNA: 3'- -UUCGCUga-CGCa-CUGGCUCCU-CCGgC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 59660 | 0.66 | 0.689483 |
Target: 5'- cGGGCGACUGCG--GCCG-GGucGUCGa -3' miRNA: 3'- -UUCGCUGACGCacUGGCuCCucCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 62647 | 0.7 | 0.463396 |
Target: 5'- -cGCGAC-GcCGuUGACCGAgaaGGAGGCCa -3' miRNA: 3'- uuCGCUGaC-GC-ACUGGCU---CCUCCGGc -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 63729 | 0.7 | 0.491282 |
Target: 5'- uGAGCGGCgUGCGcaUGGCCGcGGcggcguAGGCCGc -3' miRNA: 3'- -UUCGCUG-ACGC--ACUGGCuCC------UCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 63797 | 0.67 | 0.639294 |
Target: 5'- -cGCGGCUGCGUGAgcgugaacCCGAcGccGCCGa -3' miRNA: 3'- uuCGCUGACGCACU--------GGCUcCucCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 70865 | 0.71 | 0.410257 |
Target: 5'- aGGGCGGCcgccgugGCGUGGCCGGcGGugcacauGGCCGu -3' miRNA: 3'- -UUCGCUGa------CGCACUGGCU-CCu------CCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 74809 | 0.68 | 0.559066 |
Target: 5'- ---aGGCccGCGUGGCgGAGGuGGCCGc -3' miRNA: 3'- uucgCUGa-CGCACUGgCUCCuCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 74852 | 0.72 | 0.353286 |
Target: 5'- gAGGCGGC-GCGccgGGCgGAGGAGGCgGa -3' miRNA: 3'- -UUCGCUGaCGCa--CUGgCUCCUCCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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