miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23766 3' -60 NC_005261.1 + 74901 0.68 0.588959
Target:  5'- cGGCGGCccGCGcUGGCCGcgcggGGGAGGgCGa -3'
miRNA:   3'- uUCGCUGa-CGC-ACUGGC-----UCCUCCgGC- -5'
23766 3' -60 NC_005261.1 + 88179 0.66 0.709293
Target:  5'- gGGGCGACgccgGCGgcgccGgCGAGGcGGGCCGc -3'
miRNA:   3'- -UUCGCUGa---CGCac---UgGCUCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 89760 0.75 0.233618
Target:  5'- cAAGCuGAacgcCGUGGCCGAGGAGGCCc -3'
miRNA:   3'- -UUCG-CUgac-GCACUGGCUCCUCCGGc -5'
23766 3' -60 NC_005261.1 + 90548 0.67 0.639294
Target:  5'- -cGCcGCcGCGc--CCGAGGAGGCCGu -3'
miRNA:   3'- uuCGcUGaCGCacuGGCUCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 92608 0.67 0.649375
Target:  5'- -cGCGGC-GCGUG-CCGGGGccccGGGCgCGa -3'
miRNA:   3'- uuCGCUGaCGCACuGGCUCC----UCCG-GC- -5'
23766 3' -60 NC_005261.1 + 94685 0.66 0.679505
Target:  5'- gAGGCG-CUGgccaccgaggaCGUGGCCGAgcuGGAGcGCCGc -3'
miRNA:   3'- -UUCGCuGAC-----------GCACUGGCU---CCUC-CGGC- -5'
23766 3' -60 NC_005261.1 + 97640 0.66 0.679505
Target:  5'- gGAGCGGgcGCGgguGCCGcaccuGGGGGGCCGg -3'
miRNA:   3'- -UUCGCUgaCGCac-UGGC-----UCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 98106 0.67 0.639294
Target:  5'- -cGCGGCgggcgGCGaGGCUGGGGAcGCCGc -3'
miRNA:   3'- uuCGCUGa----CGCaCUGGCUCCUcCGGC- -5'
23766 3' -60 NC_005261.1 + 101475 0.68 0.585954
Target:  5'- cGGCGGCgGCGUGAUgcgcagcagguucuUGAGGuuGGCCa -3'
miRNA:   3'- uUCGCUGaCGCACUG--------------GCUCCu-CCGGc -5'
23766 3' -60 NC_005261.1 + 104279 0.68 0.60905
Target:  5'- cGGCGGCUGCGcgGGCCucGcAGGCCc -3'
miRNA:   3'- uUCGCUGACGCa-CUGGcuCcUCCGGc -5'
23766 3' -60 NC_005261.1 + 107729 0.79 0.135461
Target:  5'- cAGGCGGCUGCGccucGGCCGcggGGGGGGCCa -3'
miRNA:   3'- -UUCGCUGACGCa---CUGGC---UCCUCCGGc -5'
23766 3' -60 NC_005261.1 + 110183 0.66 0.689483
Target:  5'- cGGGCGGCaguuccGCGacGuuGAGGAGGCCu -3'
miRNA:   3'- -UUCGCUGa-----CGCacUggCUCCUCCGGc -5'
23766 3' -60 NC_005261.1 + 110795 0.66 0.728849
Target:  5'- cGGGgGACgGCG-GG-CGAGGAGGCgGg -3'
miRNA:   3'- -UUCgCUGaCGCaCUgGCUCCUCCGgC- -5'
23766 3' -60 NC_005261.1 + 112669 0.68 0.568989
Target:  5'- cGAGCGGCUggagcGCGaggGGCUGGGcgucGAGGCCGu -3'
miRNA:   3'- -UUCGCUGA-----CGCa--CUGGCUC----CUCCGGC- -5'
23766 3' -60 NC_005261.1 + 113895 0.7 0.49034
Target:  5'- cGGCGACgcgGCGggcgcgaUGGCCGAGGcagcGGGCgCGg -3'
miRNA:   3'- uUCGCUGa--CGC-------ACUGGCUCC----UCCG-GC- -5'
23766 3' -60 NC_005261.1 + 114348 0.73 0.316149
Target:  5'- cGAGCGGC-GCGUGGCCGcggccgagucGGuGGCCGa -3'
miRNA:   3'- -UUCGCUGaCGCACUGGCu---------CCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 117910 0.68 0.559066
Target:  5'- uGAGCGGCUGCGcggGAaCGA--AGGCCGg -3'
miRNA:   3'- -UUCGCUGACGCa--CUgGCUccUCCGGC- -5'
23766 3' -60 NC_005261.1 + 125709 0.67 0.629208
Target:  5'- cGGCGACggccgccGCGggcucggcuggGGCCGccgcaAGGGGGCCGg -3'
miRNA:   3'- uUCGCUGa------CGCa----------CUGGC-----UCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 125788 0.67 0.639294
Target:  5'- aAGGCcGCUGCGaacggggcuugGGCCGGGGccgccgcgagcgGGGCCGg -3'
miRNA:   3'- -UUCGcUGACGCa----------CUGGCUCC------------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 127637 0.67 0.669488
Target:  5'- -cGCGACgGCGgcgGcGCCGGGGGGcGCgCGg -3'
miRNA:   3'- uuCGCUGaCGCa--C-UGGCUCCUC-CG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.