Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23766 | 3' | -60 | NC_005261.1 | + | 128101 | 0.67 | 0.629208 |
Target: 5'- cGGGCGAgCgGCGcGGCgCGGGGucGGGCCGa -3' miRNA: 3'- -UUCGCU-GaCGCaCUG-GCUCC--UCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 129661 | 0.73 | 0.323335 |
Target: 5'- cGGCGGCagggGCGgGACCGGGGgcgucgcgacucGGGCCGg -3' miRNA: 3'- uUCGCUGa---CGCaCUGGCUCC------------UCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 135186 | 0.69 | 0.538394 |
Target: 5'- -uGCGGCUcGCGcggagcaUGGCCGAGGcggcgcagaGGGCCa -3' miRNA: 3'- uuCGCUGA-CGC-------ACUGGCUCC---------UCCGGc -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 135304 | 0.66 | 0.719107 |
Target: 5'- -cGCGACcgGCGUGucGCCcuGGGcGGCCGu -3' miRNA: 3'- uuCGCUGa-CGCAC--UGGc-UCCuCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 136612 | 0.67 | 0.629208 |
Target: 5'- gGAGCGGCgcGCGcGcGCCGAGGGcGGCgGg -3' miRNA: 3'- -UUCGCUGa-CGCaC-UGGCUCCU-CCGgC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 137992 | 0.68 | 0.559066 |
Target: 5'- cGGCGGCUGCGgcggcGGCUGcGGcGGCCc -3' miRNA: 3'- uUCGCUGACGCa----CUGGCuCCuCCGGc -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 138095 | 0.66 | 0.709293 |
Target: 5'- -cGCGACgggGUGcccacgGACCGGgacggggacGGGGGCCGc -3' miRNA: 3'- uuCGCUGa--CGCa-----CUGGCU---------CCUCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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