miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23766 3' -60 NC_005261.1 + 138095 0.66 0.709293
Target:  5'- -cGCGACgggGUGcccacgGACCGGgacggggacGGGGGCCGc -3'
miRNA:   3'- uuCGCUGa--CGCa-----CUGGCU---------CCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 137992 0.68 0.559066
Target:  5'- cGGCGGCUGCGgcggcGGCUGcGGcGGCCc -3'
miRNA:   3'- uUCGCUGACGCa----CUGGCuCCuCCGGc -5'
23766 3' -60 NC_005261.1 + 136612 0.67 0.629208
Target:  5'- gGAGCGGCgcGCGcGcGCCGAGGGcGGCgGg -3'
miRNA:   3'- -UUCGCUGa-CGCaC-UGGCUCCU-CCGgC- -5'
23766 3' -60 NC_005261.1 + 135304 0.66 0.719107
Target:  5'- -cGCGACcgGCGUGucGCCcuGGGcGGCCGu -3'
miRNA:   3'- uuCGCUGa-CGCAC--UGGc-UCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 135186 0.69 0.538394
Target:  5'- -uGCGGCUcGCGcggagcaUGGCCGAGGcggcgcagaGGGCCa -3'
miRNA:   3'- uuCGCUGA-CGC-------ACUGGCUCC---------UCCGGc -5'
23766 3' -60 NC_005261.1 + 129661 0.73 0.323335
Target:  5'- cGGCGGCagggGCGgGACCGGGGgcgucgcgacucGGGCCGg -3'
miRNA:   3'- uUCGCUGa---CGCaCUGGCUCC------------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 128101 0.67 0.629208
Target:  5'- cGGGCGAgCgGCGcGGCgCGGGGucGGGCCGa -3'
miRNA:   3'- -UUCGCU-GaCGCaCUG-GCUCC--UCCGGC- -5'
23766 3' -60 NC_005261.1 + 127637 0.67 0.669488
Target:  5'- -cGCGACgGCGgcgGcGCCGGGGGGcGCgCGg -3'
miRNA:   3'- uuCGCUGaCGCa--C-UGGCUCCUC-CG-GC- -5'
23766 3' -60 NC_005261.1 + 125788 0.67 0.639294
Target:  5'- aAGGCcGCUGCGaacggggcuugGGCCGGGGccgccgcgagcgGGGCCGg -3'
miRNA:   3'- -UUCGcUGACGCa----------CUGGCUCC------------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 125709 0.67 0.629208
Target:  5'- cGGCGACggccgccGCGggcucggcuggGGCCGccgcaAGGGGGCCGg -3'
miRNA:   3'- uUCGCUGa------CGCa----------CUGGC-----UCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 117910 0.68 0.559066
Target:  5'- uGAGCGGCUGCGcggGAaCGA--AGGCCGg -3'
miRNA:   3'- -UUCGCUGACGCa--CUgGCUccUCCGGC- -5'
23766 3' -60 NC_005261.1 + 114348 0.73 0.316149
Target:  5'- cGAGCGGC-GCGUGGCCGcggccgagucGGuGGCCGa -3'
miRNA:   3'- -UUCGCUGaCGCACUGGCu---------CCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 113895 0.7 0.49034
Target:  5'- cGGCGACgcgGCGggcgcgaUGGCCGAGGcagcGGGCgCGg -3'
miRNA:   3'- uUCGCUGa--CGC-------ACUGGCUCC----UCCG-GC- -5'
23766 3' -60 NC_005261.1 + 112669 0.68 0.568989
Target:  5'- cGAGCGGCUggagcGCGaggGGCUGGGcgucGAGGCCGu -3'
miRNA:   3'- -UUCGCUGA-----CGCa--CUGGCUC----CUCCGGC- -5'
23766 3' -60 NC_005261.1 + 110795 0.66 0.728849
Target:  5'- cGGGgGACgGCG-GG-CGAGGAGGCgGg -3'
miRNA:   3'- -UUCgCUGaCGCaCUgGCUCCUCCGgC- -5'
23766 3' -60 NC_005261.1 + 110183 0.66 0.689483
Target:  5'- cGGGCGGCaguuccGCGacGuuGAGGAGGCCu -3'
miRNA:   3'- -UUCGCUGa-----CGCacUggCUCCUCCGGc -5'
23766 3' -60 NC_005261.1 + 107729 0.79 0.135461
Target:  5'- cAGGCGGCUGCGccucGGCCGcggGGGGGGCCa -3'
miRNA:   3'- -UUCGCUGACGCa---CUGGC---UCCUCCGGc -5'
23766 3' -60 NC_005261.1 + 104279 0.68 0.60905
Target:  5'- cGGCGGCUGCGcgGGCCucGcAGGCCc -3'
miRNA:   3'- uUCGCUGACGCa-CUGGcuCcUCCGGc -5'
23766 3' -60 NC_005261.1 + 101475 0.68 0.585954
Target:  5'- cGGCGGCgGCGUGAUgcgcagcagguucuUGAGGuuGGCCa -3'
miRNA:   3'- uUCGCUGaCGCACUG--------------GCUCCu-CCGGc -5'
23766 3' -60 NC_005261.1 + 98106 0.67 0.639294
Target:  5'- -cGCGGCgggcgGCGaGGCUGGGGAcGCCGc -3'
miRNA:   3'- uuCGCUGa----CGCaCUGGCUCCUcCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.