miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23766 3' -60 NC_005261.1 + 97640 0.66 0.679505
Target:  5'- gGAGCGGgcGCGgguGCCGcaccuGGGGGGCCGg -3'
miRNA:   3'- -UUCGCUgaCGCac-UGGC-----UCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 94685 0.66 0.679505
Target:  5'- gAGGCG-CUGgccaccgaggaCGUGGCCGAgcuGGAGcGCCGc -3'
miRNA:   3'- -UUCGCuGAC-----------GCACUGGCU---CCUC-CGGC- -5'
23766 3' -60 NC_005261.1 + 92608 0.67 0.649375
Target:  5'- -cGCGGC-GCGUG-CCGGGGccccGGGCgCGa -3'
miRNA:   3'- uuCGCUGaCGCACuGGCUCC----UCCG-GC- -5'
23766 3' -60 NC_005261.1 + 90548 0.67 0.639294
Target:  5'- -cGCcGCcGCGc--CCGAGGAGGCCGu -3'
miRNA:   3'- uuCGcUGaCGCacuGGCUCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 89760 0.75 0.233618
Target:  5'- cAAGCuGAacgcCGUGGCCGAGGAGGCCc -3'
miRNA:   3'- -UUCG-CUgac-GCACUGGCUCCUCCGGc -5'
23766 3' -60 NC_005261.1 + 88179 0.66 0.709293
Target:  5'- gGGGCGACgccgGCGgcgccGgCGAGGcGGGCCGc -3'
miRNA:   3'- -UUCGCUGa---CGCac---UgGCUCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 74901 0.68 0.588959
Target:  5'- cGGCGGCccGCGcUGGCCGcgcggGGGAGGgCGa -3'
miRNA:   3'- uUCGCUGa-CGC-ACUGGC-----UCCUCCgGC- -5'
23766 3' -60 NC_005261.1 + 74852 0.72 0.353286
Target:  5'- gAGGCGGC-GCGccgGGCgGAGGAGGCgGa -3'
miRNA:   3'- -UUCGCUGaCGCa--CUGgCUCCUCCGgC- -5'
23766 3' -60 NC_005261.1 + 74809 0.68 0.559066
Target:  5'- ---aGGCccGCGUGGCgGAGGuGGCCGc -3'
miRNA:   3'- uucgCUGa-CGCACUGgCUCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 70865 0.71 0.410257
Target:  5'- aGGGCGGCcgccgugGCGUGGCCGGcGGugcacauGGCCGu -3'
miRNA:   3'- -UUCGCUGa------CGCACUGGCU-CCu------CCGGC- -5'
23766 3' -60 NC_005261.1 + 63797 0.67 0.639294
Target:  5'- -cGCGGCUGCGUGAgcgugaacCCGAcGccGCCGa -3'
miRNA:   3'- uuCGCUGACGCACU--------GGCUcCucCGGC- -5'
23766 3' -60 NC_005261.1 + 63729 0.7 0.491282
Target:  5'- uGAGCGGCgUGCGcaUGGCCGcGGcggcguAGGCCGc -3'
miRNA:   3'- -UUCGCUG-ACGC--ACUGGCuCC------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 62647 0.7 0.463396
Target:  5'- -cGCGAC-GcCGuUGACCGAgaaGGAGGCCa -3'
miRNA:   3'- uuCGCUGaC-GC-ACUGGCU---CCUCCGGc -5'
23766 3' -60 NC_005261.1 + 59660 0.66 0.689483
Target:  5'- cGGGCGACUGCG--GCCG-GGucGUCGa -3'
miRNA:   3'- -UUCGCUGACGCacUGGCuCCucCGGC- -5'
23766 3' -60 NC_005261.1 + 56135 0.66 0.709293
Target:  5'- aGGGCGGgggGCGcgGGCCGAGGGuGGCgGc -3'
miRNA:   3'- -UUCGCUga-CGCa-CUGGCUCCU-CCGgC- -5'
23766 3' -60 NC_005261.1 + 53592 0.73 0.316149
Target:  5'- cGGCGGCgccccaGCG-GACCGAcGAGGCCGu -3'
miRNA:   3'- uUCGCUGa-----CGCaCUGGCUcCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 52731 0.66 0.709293
Target:  5'- -uGCGGCgccgcgGCGcGAUCGGGGAaguGGCCc -3'
miRNA:   3'- uuCGCUGa-----CGCaCUGGCUCCU---CCGGc -5'
23766 3' -60 NC_005261.1 + 49657 0.67 0.629208
Target:  5'- cGAGCGACUG-GUacACCGAGaccaugucGGGGCCGu -3'
miRNA:   3'- -UUCGCUGACgCAc-UGGCUC--------CUCCGGC- -5'
23766 3' -60 NC_005261.1 + 49201 0.66 0.728849
Target:  5'- cGGcCGACaGCGaGGgCG-GGAGGCCGg -3'
miRNA:   3'- uUC-GCUGaCGCaCUgGCuCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 48337 0.7 0.445272
Target:  5'- gGGGCGcGCgcgGCGaGGCCGAGGAG-CCGg -3'
miRNA:   3'- -UUCGC-UGa--CGCaCUGGCUCCUCcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.