miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23766 3' -60 NC_005261.1 + 45171 0.66 0.728849
Target:  5'- -uGCGAC-GCGUaccgcGCCGAGuguGAGGCCa -3'
miRNA:   3'- uuCGCUGaCGCAc----UGGCUC---CUCCGGc -5'
23766 3' -60 NC_005261.1 + 39358 0.66 0.709293
Target:  5'- cGGCGGCaGCcgccucaucgGcGGCCGGGGAGGgCGg -3'
miRNA:   3'- uUCGCUGaCG----------CaCUGGCUCCUCCgGC- -5'
23766 3' -60 NC_005261.1 + 35764 0.71 0.418851
Target:  5'- aAGGCGGCU-CG-GGCCGAgacaGGAGGCCc -3'
miRNA:   3'- -UUCGCUGAcGCaCUGGCU----CCUCCGGc -5'
23766 3' -60 NC_005261.1 + 35719 0.67 0.639294
Target:  5'- cGGUGGCgGCcccGGCCGAGGccaccuGGGCCGa -3'
miRNA:   3'- uUCGCUGaCGca-CUGGCUCC------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 35310 0.67 0.639294
Target:  5'- cGGGCcgGGCUGC----UCGGGGAGGCCGg -3'
miRNA:   3'- -UUCG--CUGACGcacuGGCUCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 34682 0.66 0.689483
Target:  5'- cAGCGcGCUGCGUGACgGu--GGGCCc -3'
miRNA:   3'- uUCGC-UGACGCACUGgCuccUCCGGc -5'
23766 3' -60 NC_005261.1 + 34296 0.7 0.491282
Target:  5'- cGGgGACgccgggaGCGaGACCGAcggGGAGGCCGa -3'
miRNA:   3'- uUCgCUGa------CGCaCUGGCU---CCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 32983 0.66 0.709293
Target:  5'- gGAGgGACcGCG-GAg-GAGGGGGCCGa -3'
miRNA:   3'- -UUCgCUGaCGCaCUggCUCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 32328 0.67 0.629208
Target:  5'- -cGCGGCgcccgGCGUGGCCuGGGAcgcggaccagGGCCc -3'
miRNA:   3'- uuCGCUGa----CGCACUGGcUCCU----------CCGGc -5'
23766 3' -60 NC_005261.1 + 31694 0.66 0.728849
Target:  5'- cGGCGGCUGauCGUGAUCGAcgccguGGAccccgcgaacuGGCCGc -3'
miRNA:   3'- uUCGCUGAC--GCACUGGCU------CCU-----------CCGGC- -5'
23766 3' -60 NC_005261.1 + 30466 0.67 0.619124
Target:  5'- gGGGgGACgGgGggGA-CGAGGAGGCCGg -3'
miRNA:   3'- -UUCgCUGaCgCa-CUgGCUCCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 30179 0.7 0.463396
Target:  5'- -cGCG-CUGCGc-GCCGAGGcGGCCGc -3'
miRNA:   3'- uuCGCuGACGCacUGGCUCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 28832 0.7 0.491282
Target:  5'- gAGGCGGCcGCG--GCUGAGGcGGCCGu -3'
miRNA:   3'- -UUCGCUGaCGCacUGGCUCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 27355 0.69 0.539373
Target:  5'- gGAGCGGC-GcCG-GACCGGcGcGAGGCCGg -3'
miRNA:   3'- -UUCGCUGaC-GCaCUGGCU-C-CUCCGGC- -5'
23766 3' -60 NC_005261.1 + 24925 0.72 0.385146
Target:  5'- cGGCGGCUGCaGccGCCGAGGggcAGGCUGg -3'
miRNA:   3'- uUCGCUGACG-CacUGGCUCC---UCCGGC- -5'
23766 3' -60 NC_005261.1 + 23833 0.68 0.568989
Target:  5'- cGGGcCGGCUaGgGUGggcucGCCGGGGcAGGCCGg -3'
miRNA:   3'- -UUC-GCUGA-CgCAC-----UGGCUCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 23776 0.68 0.568989
Target:  5'- cGGGcCGGCUaGgGUGggcucGCCGGGGcAGGCCGg -3'
miRNA:   3'- -UUC-GCUGA-CgCAC-----UGGCUCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 16172 0.69 0.538394
Target:  5'- uAGGgGGCgcggGCGUGGCgGGGGugggcggGGGCCGc -3'
miRNA:   3'- -UUCgCUGa---CGCACUGgCUCC-------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 15958 0.66 0.709293
Target:  5'- gGGGCGAgUgGCG-GGCgGGGGAGGgcCCGg -3'
miRNA:   3'- -UUCGCUgA-CGCaCUGgCUCCUCC--GGC- -5'
23766 3' -60 NC_005261.1 + 14974 0.73 0.316149
Target:  5'- gGGGCGACUGCGcGGCCGcGccGGCCGc -3'
miRNA:   3'- -UUCGCUGACGCaCUGGCuCcuCCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.