Results 61 - 67 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23766 | 3' | -60 | NC_005261.1 | + | 14749 | 0.66 | 0.719107 |
|
Target: 5'- gGGGCGAUcgGCGccgcGCCGcgacaGGGGGGCCGc -3' miRNA: 3'- -UUCGCUGa-CGCac--UGGC-----UCCUCCGGC- -5' |
|||||||
| 23766 | 3' | -60 | NC_005261.1 | + | 13413 | 0.68 | 0.610057 |
|
Target: 5'- aGGGCGACgcgaaggcgcaccgcGCGUcGACCGggugcAGGcAGGCCGg -3' miRNA: 3'- -UUCGCUGa--------------CGCA-CUGGC-----UCC-UCCGGC- -5' |
|||||||
| 23766 | 3' | -60 | NC_005261.1 | + | 6433 | 0.66 | 0.709293 |
|
Target: 5'- -cGCGAggGCG-GuCCGGGGGccGGCCGg -3' miRNA: 3'- uuCGCUgaCGCaCuGGCUCCU--CCGGC- -5' |
|||||||
| 23766 | 3' | -60 | NC_005261.1 | + | 2787 | 0.72 | 0.353286 |
|
Target: 5'- cGAGgGGCUGCcgccggcGGCCGGGaGGGGCCGg -3' miRNA: 3'- -UUCgCUGACGca-----CUGGCUC-CUCCGGC- -5' |
|||||||
| 23766 | 3' | -60 | NC_005261.1 | + | 1048 | 0.68 | 0.588959 |
|
Target: 5'- cGGGCGGCgGCGUuagcGGCgCGGGG-GGCUGg -3' miRNA: 3'- -UUCGCUGaCGCA----CUG-GCUCCuCCGGC- -5' |
|||||||
| 23766 | 3' | -60 | NC_005261.1 | + | 424 | 0.66 | 0.709293 |
|
Target: 5'- -cGCGACgggGUGcccacgGACCGGgacggggacGGGGGCCGc -3' miRNA: 3'- uuCGCUGa--CGCa-----CUGGCU---------CCUCCGGC- -5' |
|||||||
| 23766 | 3' | -60 | NC_005261.1 | + | 321 | 0.68 | 0.559066 |
|
Target: 5'- cGGCGGCUGCGgcggcGGCUGcGGcGGCCc -3' miRNA: 3'- uUCGCUGACGCa----CUGGCuCCuCCGGc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home