miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23766 3' -60 NC_005261.1 + 110795 0.66 0.728849
Target:  5'- cGGGgGACgGCG-GG-CGAGGAGGCgGg -3'
miRNA:   3'- -UUCgCUGaCGCaCUgGCUCCUCCGgC- -5'
23766 3' -60 NC_005261.1 + 30179 0.7 0.463396
Target:  5'- -cGCG-CUGCGc-GCCGAGGcGGCCGc -3'
miRNA:   3'- uuCGCuGACGCacUGGCUCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 62647 0.7 0.463396
Target:  5'- -cGCGAC-GcCGuUGACCGAgaaGGAGGCCa -3'
miRNA:   3'- uuCGCUGaC-GC-ACUGGCU---CCUCCGGc -5'
23766 3' -60 NC_005261.1 + 113895 0.7 0.49034
Target:  5'- cGGCGACgcgGCGggcgcgaUGGCCGAGGcagcGGGCgCGg -3'
miRNA:   3'- uUCGCUGa--CGC-------ACUGGCUCC----UCCG-GC- -5'
23766 3' -60 NC_005261.1 + 34296 0.7 0.491282
Target:  5'- cGGgGACgccgggaGCGaGACCGAcggGGAGGCCGa -3'
miRNA:   3'- uUCgCUGa------CGCaCUGGCU---CCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 28832 0.7 0.491282
Target:  5'- gAGGCGGCcGCG--GCUGAGGcGGCCGu -3'
miRNA:   3'- -UUCGCUGaCGCacUGGCUCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 63729 0.7 0.491282
Target:  5'- uGAGCGGCgUGCGcaUGGCCGcGGcggcguAGGCCGc -3'
miRNA:   3'- -UUCGCUG-ACGC--ACUGGCuCC------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 16172 0.69 0.538394
Target:  5'- uAGGgGGCgcggGCGUGGCgGGGGugggcggGGGCCGc -3'
miRNA:   3'- -UUCgCUGa---CGCACUGgCUCC-------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 135186 0.69 0.538394
Target:  5'- -uGCGGCUcGCGcggagcaUGGCCGAGGcggcgcagaGGGCCa -3'
miRNA:   3'- uuCGCUGA-CGC-------ACUGGCUCC---------UCCGGc -5'
23766 3' -60 NC_005261.1 + 48337 0.7 0.445272
Target:  5'- gGGGCGcGCgcgGCGaGGCCGAGGAG-CCGg -3'
miRNA:   3'- -UUCGC-UGa--CGCaCUGGCUCCUCcGGC- -5'
23766 3' -60 NC_005261.1 + 35764 0.71 0.418851
Target:  5'- aAGGCGGCU-CG-GGCCGAgacaGGAGGCCc -3'
miRNA:   3'- -UUCGCUGAcGCaCUGGCU----CCUCCGGc -5'
23766 3' -60 NC_005261.1 + 70865 0.71 0.410257
Target:  5'- aGGGCGGCcgccgugGCGUGGCCGGcGGugcacauGGCCGu -3'
miRNA:   3'- -UUCGCUGa------CGCACUGGCU-CCu------CCGGC- -5'
23766 3' -60 NC_005261.1 + 89760 0.75 0.233618
Target:  5'- cAAGCuGAacgcCGUGGCCGAGGAGGCCc -3'
miRNA:   3'- -UUCG-CUgac-GCACUGGCUCCUCCGGc -5'
23766 3' -60 NC_005261.1 + 14974 0.73 0.316149
Target:  5'- gGGGCGACUGCGcGGCCGcGccGGCCGc -3'
miRNA:   3'- -UUCGCUGACGCaCUGGCuCcuCCGGC- -5'
23766 3' -60 NC_005261.1 + 53592 0.73 0.316149
Target:  5'- cGGCGGCgccccaGCG-GACCGAcGAGGCCGu -3'
miRNA:   3'- uUCGCUGa-----CGCaCUGGCUcCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 114348 0.73 0.316149
Target:  5'- cGAGCGGC-GCGUGGCCGcggccgagucGGuGGCCGa -3'
miRNA:   3'- -UUCGCUGaCGCACUGGCu---------CCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 129661 0.73 0.323335
Target:  5'- cGGCGGCagggGCGgGACCGGGGgcgucgcgacucGGGCCGg -3'
miRNA:   3'- uUCGCUGa---CGCaCUGGCUCC------------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 74852 0.72 0.353286
Target:  5'- gAGGCGGC-GCGccgGGCgGAGGAGGCgGa -3'
miRNA:   3'- -UUCGCUGaCGCa--CUGgCUCCUCCGgC- -5'
23766 3' -60 NC_005261.1 + 2787 0.72 0.353286
Target:  5'- cGAGgGGCUGCcgccggcGGCCGGGaGGGGCCGg -3'
miRNA:   3'- -UUCgCUGACGca-----CUGGCUC-CUCCGGC- -5'
23766 3' -60 NC_005261.1 + 24925 0.72 0.385146
Target:  5'- cGGCGGCUGCaGccGCCGAGGggcAGGCUGg -3'
miRNA:   3'- uUCGCUGACG-CacUGGCUCC---UCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.