miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23766 3' -60 NC_005261.1 + 129661 0.73 0.323335
Target:  5'- cGGCGGCagggGCGgGACCGGGGgcgucgcgacucGGGCCGg -3'
miRNA:   3'- uUCGCUGa---CGCaCUGGCUCC------------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 114348 0.73 0.316149
Target:  5'- cGAGCGGC-GCGUGGCCGcggccgagucGGuGGCCGa -3'
miRNA:   3'- -UUCGCUGaCGCACUGGCu---------CCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 53592 0.73 0.316149
Target:  5'- cGGCGGCgccccaGCG-GACCGAcGAGGCCGu -3'
miRNA:   3'- uUCGCUGa-----CGCaCUGGCUcCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 14974 0.73 0.316149
Target:  5'- gGGGCGACUGCGcGGCCGcGccGGCCGc -3'
miRNA:   3'- -UUCGCUGACGCaCUGGCuCcuCCGGC- -5'
23766 3' -60 NC_005261.1 + 89760 0.75 0.233618
Target:  5'- cAAGCuGAacgcCGUGGCCGAGGAGGCCc -3'
miRNA:   3'- -UUCG-CUgac-GCACUGGCUCCUCCGGc -5'
23766 3' -60 NC_005261.1 + 113895 0.7 0.49034
Target:  5'- cGGCGACgcgGCGggcgcgaUGGCCGAGGcagcGGGCgCGg -3'
miRNA:   3'- uUCGCUGa--CGC-------ACUGGCUCC----UCCG-GC- -5'
23766 3' -60 NC_005261.1 + 34296 0.7 0.491282
Target:  5'- cGGgGACgccgggaGCGaGACCGAcggGGAGGCCGa -3'
miRNA:   3'- uUCgCUGa------CGCaCUGGCU---CCUCCGGC- -5'
23766 3' -60 NC_005261.1 + 101475 0.68 0.585954
Target:  5'- cGGCGGCgGCGUGAUgcgcagcagguucuUGAGGuuGGCCa -3'
miRNA:   3'- uUCGCUGaCGCACUG--------------GCUCCu-CCGGc -5'
23766 3' -60 NC_005261.1 + 112669 0.68 0.568989
Target:  5'- cGAGCGGCUggagcGCGaggGGCUGGGcgucGAGGCCGu -3'
miRNA:   3'- -UUCGCUGA-----CGCa--CUGGCUC----CUCCGGC- -5'
23766 3' -60 NC_005261.1 + 23833 0.68 0.568989
Target:  5'- cGGGcCGGCUaGgGUGggcucGCCGGGGcAGGCCGg -3'
miRNA:   3'- -UUC-GCUGA-CgCAC-----UGGCUCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 23776 0.68 0.568989
Target:  5'- cGGGcCGGCUaGgGUGggcucGCCGGGGcAGGCCGg -3'
miRNA:   3'- -UUC-GCUGA-CgCAC-----UGGCUCC-UCCGGC- -5'
23766 3' -60 NC_005261.1 + 137992 0.68 0.559066
Target:  5'- cGGCGGCUGCGgcggcGGCUGcGGcGGCCc -3'
miRNA:   3'- uUCGCUGACGCa----CUGGCuCCuCCGGc -5'
23766 3' -60 NC_005261.1 + 117910 0.68 0.559066
Target:  5'- uGAGCGGCUGCGcggGAaCGA--AGGCCGg -3'
miRNA:   3'- -UUCGCUGACGCa--CUgGCUccUCCGGC- -5'
23766 3' -60 NC_005261.1 + 321 0.68 0.559066
Target:  5'- cGGCGGCUGCGgcggcGGCUGcGGcGGCCc -3'
miRNA:   3'- uUCGCUGACGCa----CUGGCuCCuCCGGc -5'
23766 3' -60 NC_005261.1 + 74809 0.68 0.559066
Target:  5'- ---aGGCccGCGUGGCgGAGGuGGCCGc -3'
miRNA:   3'- uucgCUGa-CGCACUGgCUCCuCCGGC- -5'
23766 3' -60 NC_005261.1 + 27355 0.69 0.539373
Target:  5'- gGAGCGGC-GcCG-GACCGGcGcGAGGCCGg -3'
miRNA:   3'- -UUCGCUGaC-GCaCUGGCU-C-CUCCGGC- -5'
23766 3' -60 NC_005261.1 + 135186 0.69 0.538394
Target:  5'- -uGCGGCUcGCGcggagcaUGGCCGAGGcggcgcagaGGGCCa -3'
miRNA:   3'- uuCGCUGA-CGC-------ACUGGCUCC---------UCCGGc -5'
23766 3' -60 NC_005261.1 + 16172 0.69 0.538394
Target:  5'- uAGGgGGCgcggGCGUGGCgGGGGugggcggGGGCCGc -3'
miRNA:   3'- -UUCgCUGa---CGCACUGgCUCC-------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 63729 0.7 0.491282
Target:  5'- uGAGCGGCgUGCGcaUGGCCGcGGcggcguAGGCCGc -3'
miRNA:   3'- -UUCGCUG-ACGC--ACUGGCuCC------UCCGGC- -5'
23766 3' -60 NC_005261.1 + 28832 0.7 0.491282
Target:  5'- gAGGCGGCcGCG--GCUGAGGcGGCCGu -3'
miRNA:   3'- -UUCGCUGaCGCacUGGCUCCuCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.