Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23766 | 3' | -60 | NC_005261.1 | + | 117910 | 0.68 | 0.559066 |
Target: 5'- uGAGCGGCUGCGcggGAaCGA--AGGCCGg -3' miRNA: 3'- -UUCGCUGACGCa--CUgGCUccUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 321 | 0.68 | 0.559066 |
Target: 5'- cGGCGGCUGCGgcggcGGCUGcGGcGGCCc -3' miRNA: 3'- uUCGCUGACGCa----CUGGCuCCuCCGGc -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 74809 | 0.68 | 0.559066 |
Target: 5'- ---aGGCccGCGUGGCgGAGGuGGCCGc -3' miRNA: 3'- uucgCUGa-CGCACUGgCUCCuCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 27355 | 0.69 | 0.539373 |
Target: 5'- gGAGCGGC-GcCG-GACCGGcGcGAGGCCGg -3' miRNA: 3'- -UUCGCUGaC-GCaCUGGCU-C-CUCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 135186 | 0.69 | 0.538394 |
Target: 5'- -uGCGGCUcGCGcggagcaUGGCCGAGGcggcgcagaGGGCCa -3' miRNA: 3'- uuCGCUGA-CGC-------ACUGGCUCC---------UCCGGc -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 16172 | 0.69 | 0.538394 |
Target: 5'- uAGGgGGCgcggGCGUGGCgGGGGugggcggGGGCCGc -3' miRNA: 3'- -UUCgCUGa---CGCACUGgCUCC-------UCCGGC- -5' |
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23766 | 3' | -60 | NC_005261.1 | + | 107729 | 0.79 | 0.135461 |
Target: 5'- cAGGCGGCUGCGccucGGCCGcggGGGGGGCCa -3' miRNA: 3'- -UUCGCUGACGCa---CUGGC---UCCUCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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