miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23766 5' -57.4 NC_005261.1 + 132155 0.66 0.834253
Target:  5'- cUCGAGCGCG-CcGCCGcUGcaggcAGCGCg- -3'
miRNA:   3'- cAGCUCGCGCaGaUGGC-AC-----UCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 103925 0.66 0.834253
Target:  5'- gGUCGGGCGCGgcgUCUGCCa-GA-CGCUg -3'
miRNA:   3'- -CAGCUCGCGC---AGAUGGcaCUcGCGAa -5'
23766 5' -57.4 NC_005261.1 + 72463 0.66 0.834253
Target:  5'- -gCGAGCGCGgcgAgCGcGAGCGCg- -3'
miRNA:   3'- caGCUCGCGCagaUgGCaCUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 44200 0.66 0.834253
Target:  5'- -gCGAGCGCGagCUGcaggcggcCCGgGAGCGCg- -3'
miRNA:   3'- caGCUCGCGCa-GAU--------GGCaCUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 52676 0.66 0.825814
Target:  5'- uUCGAGCGgGccCUGCuCGcGGGCGCg- -3'
miRNA:   3'- cAGCUCGCgCa-GAUG-GCaCUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 118809 0.66 0.825814
Target:  5'- -aCGuGgGCGUCUgcGCCcUGGGCGCg- -3'
miRNA:   3'- caGCuCgCGCAGA--UGGcACUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 41098 0.66 0.817196
Target:  5'- aGUCGAcCGCGUCguccgcgGCgGgcccGAGCGCUUc -3'
miRNA:   3'- -CAGCUcGCGCAGa------UGgCa---CUCGCGAA- -5'
23766 5' -57.4 NC_005261.1 + 46238 0.66 0.808407
Target:  5'- -aCGAGCGCGUCgcagGCCGcgGcGGCGg-- -3'
miRNA:   3'- caGCUCGCGCAGa---UGGCa-C-UCGCgaa -5'
23766 5' -57.4 NC_005261.1 + 97418 0.66 0.808407
Target:  5'- -gCGGGCGCGccgggcCUGCCcuUGGGCGCg- -3'
miRNA:   3'- caGCUCGCGCa-----GAUGGc-ACUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 116194 0.66 0.790352
Target:  5'- -cUGGGCGCGUC-GCCGcagaAGCGCUc -3'
miRNA:   3'- caGCUCGCGCAGaUGGCac--UCGCGAa -5'
23766 5' -57.4 NC_005261.1 + 48314 0.67 0.781103
Target:  5'- --gGGGCGCGUCgggcCCGggcucggGGGCGCg- -3'
miRNA:   3'- cagCUCGCGCAGau--GGCa------CUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 68571 0.67 0.771719
Target:  5'- uUUGAGCGCGUCgccGCCGaggcGGGcCGCg- -3'
miRNA:   3'- cAGCUCGCGCAGa--UGGCa---CUC-GCGaa -5'
23766 5' -57.4 NC_005261.1 + 102771 0.67 0.771719
Target:  5'- -gCGAGCGCGcccgaggccUCgccccgGCCGcGAGCGCg- -3'
miRNA:   3'- caGCUCGCGC---------AGa-----UGGCaCUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 75498 0.67 0.771719
Target:  5'- -aCGAGCGCGgggcgCUggaggcgcacGCCGUGGucgccGCGCUg -3'
miRNA:   3'- caGCUCGCGCa----GA----------UGGCACU-----CGCGAa -5'
23766 5' -57.4 NC_005261.1 + 90796 0.67 0.762208
Target:  5'- -cCGGcGCGCG-CUACCGcGuGCGCUg -3'
miRNA:   3'- caGCU-CGCGCaGAUGGCaCuCGCGAa -5'
23766 5' -57.4 NC_005261.1 + 81995 0.67 0.762208
Target:  5'- aGUUGuGCGCG-CUGCCGUcgaaGAGCGg-- -3'
miRNA:   3'- -CAGCuCGCGCaGAUGGCA----CUCGCgaa -5'
23766 5' -57.4 NC_005261.1 + 84970 0.67 0.752581
Target:  5'- cGUCGGGCGCGUCcGCgaugCGccGGCGCa- -3'
miRNA:   3'- -CAGCUCGCGCAGaUG----GCacUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 133130 0.67 0.742845
Target:  5'- -gCGuGCGCGUCUcccuGCgGUGcGCGCUc -3'
miRNA:   3'- caGCuCGCGCAGA----UGgCACuCGCGAa -5'
23766 5' -57.4 NC_005261.1 + 75544 0.67 0.742845
Target:  5'- -gCGGcuGCGCGUcCUGCCGgccauccccgGGGCGCUg -3'
miRNA:   3'- caGCU--CGCGCA-GAUGGCa---------CUCGCGAa -5'
23766 5' -57.4 NC_005261.1 + 111733 0.67 0.733012
Target:  5'- -aCGAGCGCGUgUA-CGUGaAGUGCg- -3'
miRNA:   3'- caGCUCGCGCAgAUgGCAC-UCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.