Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 135231 | 0.75 | 0.326854 |
Target: 5'- -cCGAGCGCGUCgccGCCGUcuuugcGGGCGCg- -3' miRNA: 3'- caGCUCGCGCAGa--UGGCA------CUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 21691 | 0.75 | 0.342038 |
Target: 5'- cUCGAGCGCGUC-GCgGgcGAGCGCUUc -3' miRNA: 3'- cAGCUCGCGCAGaUGgCa-CUCGCGAA- -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 71342 | 0.75 | 0.342038 |
Target: 5'- -gCGAGCGCGUCcuCgGUGAGCGCc- -3' miRNA: 3'- caGCUCGCGCAGauGgCACUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 51210 | 0.74 | 0.357724 |
Target: 5'- -cCGGGCGCG-CUGCUGcUGGGCGCg- -3' miRNA: 3'- caGCUCGCGCaGAUGGC-ACUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 13111 | 0.74 | 0.382184 |
Target: 5'- cUCGGGgGCGUCggcgGCCGcgGGGCGCg- -3' miRNA: 3'- cAGCUCgCGCAGa---UGGCa-CUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 40223 | 0.73 | 0.42624 |
Target: 5'- -aUGAGCGuCGUCgucucuggcccggggGCCGUGAGCGCc- -3' miRNA: 3'- caGCUCGC-GCAGa--------------UGGCACUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 31577 | 0.73 | 0.425348 |
Target: 5'- -aCGGGCGCGcCggaCGUGAGCGCg- -3' miRNA: 3'- caGCUCGCGCaGaugGCACUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 117963 | 0.73 | 0.416483 |
Target: 5'- -aCGGGCGCGcucgCUGCCaUGGGCGCg- -3' miRNA: 3'- caGCUCGCGCa---GAUGGcACUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 25286 | 0.73 | 0.407733 |
Target: 5'- --gGGGCGCgGUCUgugGCCGUGAGCGUc- -3' miRNA: 3'- cagCUCGCG-CAGA---UGGCACUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 100054 | 0.71 | 0.549525 |
Target: 5'- cUCGAGCGCGcCgccGCCGcccggGGGCGCg- -3' miRNA: 3'- cAGCUCGCGCaGa--UGGCa----CUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 43619 | 0.7 | 0.61072 |
Target: 5'- -gCGAGUGCuUCgUGCUGUGGGCGCc- -3' miRNA: 3'- caGCUCGCGcAG-AUGGCACUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 12311 | 0.7 | 0.61072 |
Target: 5'- -aCGGGCGCGUa-GCCGgcGGGCGCg- -3' miRNA: 3'- caGCUCGCGCAgaUGGCa-CUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 33886 | 0.7 | 0.569763 |
Target: 5'- cUCcGGCGCGUC-ACCG-GGGCGCg- -3' miRNA: 3'- cAGcUCGCGCAGaUGGCaCUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 104726 | 0.7 | 0.569763 |
Target: 5'- --aGGGCGCGUCgUGCCGcGuGCGCg- -3' miRNA: 3'- cagCUCGCGCAG-AUGGCaCuCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 73224 | 0.69 | 0.651932 |
Target: 5'- --gGGGCGCGgugGCCGcGAGCGCg- -3' miRNA: 3'- cagCUCGCGCagaUGGCaCUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 42858 | 0.69 | 0.662216 |
Target: 5'- -gCGAGCGCGUCguguCC--GAGCGCg- -3' miRNA: 3'- caGCUCGCGCAGau--GGcaCUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 37165 | 0.68 | 0.692884 |
Target: 5'- cUCGcGCGCG-CUugCGccUGGGCGCUg -3' miRNA: 3'- cAGCuCGCGCaGAugGC--ACUCGCGAa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 57585 | 0.68 | 0.692884 |
Target: 5'- cGUUGAGCGCGUCga-UGUGccaccuggcGGCGCa- -3' miRNA: 3'- -CAGCUCGCGCAGaugGCAC---------UCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 46551 | 0.68 | 0.713088 |
Target: 5'- aGUCGucccgcAGCGCGagcgCUGCUGcGAGCGCg- -3' miRNA: 3'- -CAGC------UCGCGCa---GAUGGCaCUCGCGaa -5' |
|||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 46152 | 0.68 | 0.713088 |
Target: 5'- -cCGAGCGCGgcaCUgcgccccagucGCCGaUGGGCGCa- -3' miRNA: 3'- caGCUCGCGCa--GA-----------UGGC-ACUCGCGaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home