miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23766 5' -57.4 NC_005261.1 + 12311 0.7 0.61072
Target:  5'- -aCGGGCGCGUa-GCCGgcGGGCGCg- -3'
miRNA:   3'- caGCUCGCGCAgaUGGCa-CUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 13111 0.74 0.382184
Target:  5'- cUCGGGgGCGUCggcgGCCGcgGGGCGCg- -3'
miRNA:   3'- cAGCUCgCGCAGa---UGGCa-CUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 19080 0.67 0.733012
Target:  5'- cUCG-GCGCGUgCUugCGUG-GCGUUg -3'
miRNA:   3'- cAGCuCGCGCA-GAugGCACuCGCGAa -5'
23766 5' -57.4 NC_005261.1 + 21691 0.75 0.342038
Target:  5'- cUCGAGCGCGUC-GCgGgcGAGCGCUUc -3'
miRNA:   3'- cAGCUCGCGCAGaUGgCa-CUCGCGAA- -5'
23766 5' -57.4 NC_005261.1 + 25286 0.73 0.407733
Target:  5'- --gGGGCGCgGUCUgugGCCGUGAGCGUc- -3'
miRNA:   3'- cagCUCGCG-CAGA---UGGCACUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 31577 0.73 0.425348
Target:  5'- -aCGGGCGCGcCggaCGUGAGCGCg- -3'
miRNA:   3'- caGCUCGCGCaGaugGCACUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 33886 0.7 0.569763
Target:  5'- cUCcGGCGCGUC-ACCG-GGGCGCg- -3'
miRNA:   3'- cAGcUCGCGCAGaUGGCaCUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 37165 0.68 0.692884
Target:  5'- cUCGcGCGCG-CUugCGccUGGGCGCUg -3'
miRNA:   3'- cAGCuCGCGCaGAugGC--ACUCGCGAa -5'
23766 5' -57.4 NC_005261.1 + 40223 0.73 0.42624
Target:  5'- -aUGAGCGuCGUCgucucuggcccggggGCCGUGAGCGCc- -3'
miRNA:   3'- caGCUCGC-GCAGa--------------UGGCACUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 41098 0.66 0.817196
Target:  5'- aGUCGAcCGCGUCguccgcgGCgGgcccGAGCGCUUc -3'
miRNA:   3'- -CAGCUcGCGCAGa------UGgCa---CUCGCGAA- -5'
23766 5' -57.4 NC_005261.1 + 42858 0.69 0.662216
Target:  5'- -gCGAGCGCGUCguguCC--GAGCGCg- -3'
miRNA:   3'- caGCUCGCGCAGau--GGcaCUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 43619 0.7 0.61072
Target:  5'- -gCGAGUGCuUCgUGCUGUGGGCGCc- -3'
miRNA:   3'- caGCUCGCGcAG-AUGGCACUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 44200 0.66 0.834253
Target:  5'- -gCGAGCGCGagCUGcaggcggcCCGgGAGCGCg- -3'
miRNA:   3'- caGCUCGCGCa-GAU--------GGCaCUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 46152 0.68 0.713088
Target:  5'- -cCGAGCGCGgcaCUgcgccccagucGCCGaUGGGCGCa- -3'
miRNA:   3'- caGCUCGCGCa--GA-----------UGGC-ACUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 46238 0.66 0.808407
Target:  5'- -aCGAGCGCGUCgcagGCCGcgGcGGCGg-- -3'
miRNA:   3'- caGCUCGCGCAGa---UGGCa-C-UCGCgaa -5'
23766 5' -57.4 NC_005261.1 + 46551 0.68 0.713088
Target:  5'- aGUCGucccgcAGCGCGagcgCUGCUGcGAGCGCg- -3'
miRNA:   3'- -CAGC------UCGCGCa---GAUGGCaCUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 48314 0.67 0.781103
Target:  5'- --gGGGCGCGUCgggcCCGggcucggGGGCGCg- -3'
miRNA:   3'- cagCUCGCGCAGau--GGCa------CUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 51210 0.74 0.357724
Target:  5'- -cCGGGCGCG-CUGCUGcUGGGCGCg- -3'
miRNA:   3'- caGCUCGCGCaGAUGGC-ACUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 52676 0.66 0.825814
Target:  5'- uUCGAGCGgGccCUGCuCGcGGGCGCg- -3'
miRNA:   3'- cAGCUCGCgCa-GAUG-GCaCUCGCGaa -5'
23766 5' -57.4 NC_005261.1 + 57585 0.68 0.692884
Target:  5'- cGUUGAGCGCGUCga-UGUGccaccuggcGGCGCa- -3'
miRNA:   3'- -CAGCUCGCGCAGaugGCAC---------UCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.