Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23766 | 5' | -57.4 | NC_005261.1 | + | 68571 | 0.67 | 0.771719 |
Target: 5'- uUUGAGCGCGUCgccGCCGaggcGGGcCGCg- -3' miRNA: 3'- cAGCUCGCGCAGa--UGGCa---CUC-GCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 71342 | 0.75 | 0.342038 |
Target: 5'- -gCGAGCGCGUCcuCgGUGAGCGCc- -3' miRNA: 3'- caGCUCGCGCAGauGgCACUCGCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 72463 | 0.66 | 0.834253 |
Target: 5'- -gCGAGCGCGgcgAgCGcGAGCGCg- -3' miRNA: 3'- caGCUCGCGCagaUgGCaCUCGCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 73224 | 0.69 | 0.651932 |
Target: 5'- --gGGGCGCGgugGCCGcGAGCGCg- -3' miRNA: 3'- cagCUCGCGCagaUGGCaCUCGCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 75498 | 0.67 | 0.771719 |
Target: 5'- -aCGAGCGCGgggcgCUggaggcgcacGCCGUGGucgccGCGCUg -3' miRNA: 3'- caGCUCGCGCa----GA----------UGGCACU-----CGCGAa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 75544 | 0.67 | 0.742845 |
Target: 5'- -gCGGcuGCGCGUcCUGCCGgccauccccgGGGCGCUg -3' miRNA: 3'- caGCU--CGCGCA-GAUGGCa---------CUCGCGAa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 81995 | 0.67 | 0.762208 |
Target: 5'- aGUUGuGCGCG-CUGCCGUcgaaGAGCGg-- -3' miRNA: 3'- -CAGCuCGCGCaGAUGGCA----CUCGCgaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 84970 | 0.67 | 0.752581 |
Target: 5'- cGUCGGGCGCGUCcGCgaugCGccGGCGCa- -3' miRNA: 3'- -CAGCUCGCGCAGaUG----GCacUCGCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 90796 | 0.67 | 0.762208 |
Target: 5'- -cCGGcGCGCG-CUACCGcGuGCGCUg -3' miRNA: 3'- caGCU-CGCGCaGAUGGCaCuCGCGAa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 97418 | 0.66 | 0.808407 |
Target: 5'- -gCGGGCGCGccgggcCUGCCcuUGGGCGCg- -3' miRNA: 3'- caGCUCGCGCa-----GAUGGc-ACUCGCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 100054 | 0.71 | 0.549525 |
Target: 5'- cUCGAGCGCGcCgccGCCGcccggGGGCGCg- -3' miRNA: 3'- cAGCUCGCGCaGa--UGGCa----CUCGCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 102771 | 0.67 | 0.771719 |
Target: 5'- -gCGAGCGCGcccgaggccUCgccccgGCCGcGAGCGCg- -3' miRNA: 3'- caGCUCGCGC---------AGa-----UGGCaCUCGCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 103925 | 0.66 | 0.834253 |
Target: 5'- gGUCGGGCGCGgcgUCUGCCa-GA-CGCUg -3' miRNA: 3'- -CAGCUCGCGC---AGAUGGcaCUcGCGAa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 104726 | 0.7 | 0.569763 |
Target: 5'- --aGGGCGCGUCgUGCCGcGuGCGCg- -3' miRNA: 3'- cagCUCGCGCAG-AUGGCaCuCGCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 111733 | 0.67 | 0.733012 |
Target: 5'- -aCGAGCGCGUgUA-CGUGaAGUGCg- -3' miRNA: 3'- caGCUCGCGCAgAUgGCAC-UCGCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 116194 | 0.66 | 0.790352 |
Target: 5'- -cUGGGCGCGUC-GCCGcagaAGCGCUc -3' miRNA: 3'- caGCUCGCGCAGaUGGCac--UCGCGAa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 117963 | 0.73 | 0.416483 |
Target: 5'- -aCGGGCGCGcucgCUGCCaUGGGCGCg- -3' miRNA: 3'- caGCUCGCGCa---GAUGGcACUCGCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 118809 | 0.66 | 0.825814 |
Target: 5'- -aCGuGgGCGUCUgcGCCcUGGGCGCg- -3' miRNA: 3'- caGCuCgCGCAGA--UGGcACUCGCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 120343 | 0.68 | 0.682701 |
Target: 5'- -cCGAGCGCGUCUcccugcGCUGgacgGuGCGCg- -3' miRNA: 3'- caGCUCGCGCAGA------UGGCa---CuCGCGaa -5' |
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23766 | 5' | -57.4 | NC_005261.1 | + | 132155 | 0.66 | 0.834253 |
Target: 5'- cUCGAGCGCG-CcGCCGcUGcaggcAGCGCg- -3' miRNA: 3'- cAGCUCGCGCaGaUGGC-AC-----UCGCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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