miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 12513 0.66 0.911669
Target:  5'- gGGCGAcCGCGCggGGCCccGCgccGCCg -3'
miRNA:   3'- gUCGUU-GCGCGa-CCGGuuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 30160 0.66 0.911669
Target:  5'- uUAGCGGCGcCGCgcccGCCGcGCUGcgcGCCg -3'
miRNA:   3'- -GUCGUUGC-GCGac--CGGUuCGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 13348 0.66 0.911669
Target:  5'- cCAGCggUcgGCGgaGGCUggGCgGcACCg -3'
miRNA:   3'- -GUCGuuG--CGCgaCCGGuuCGaCaUGG- -5'
23767 3' -55.2 NC_005261.1 + 87492 0.66 0.911669
Target:  5'- -cGCGGcCGUGCUGGCgcgCAGGCgcucGCCg -3'
miRNA:   3'- guCGUU-GCGCGACCG---GUUCGaca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 112454 0.66 0.911669
Target:  5'- -uGCGACGUGCgGGCCGuGCUaaACa -3'
miRNA:   3'- guCGUUGCGCGaCCGGUuCGAcaUGg -5'
23767 3' -55.2 NC_005261.1 + 36908 0.66 0.911669
Target:  5'- -cGCGAcccCGCGCUgGGCCGGGaC-GUACUc -3'
miRNA:   3'- guCGUU---GCGCGA-CCGGUUC-GaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 4536 0.66 0.911669
Target:  5'- gCGGCGaggGCGCcgggccCUGGCCuuGGCUGgauCCg -3'
miRNA:   3'- -GUCGU---UGCGc-----GACCGGu-UCGACau-GG- -5'
23767 3' -55.2 NC_005261.1 + 13096 0.66 0.911669
Target:  5'- gGGCGGCGgGCUcGGCUcggGGGCgucgGcgGCCg -3'
miRNA:   3'- gUCGUUGCgCGA-CCGG---UUCGa---Ca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 51490 0.66 0.911669
Target:  5'- cCGGCGcCGCGCcccugaugcucGGCCAGauGCUGggcGCCg -3'
miRNA:   3'- -GUCGUuGCGCGa----------CCGGUU--CGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 93217 0.66 0.911669
Target:  5'- cCAGCAGCGCcaGCgcGGCaaaaAAGCg--GCCg -3'
miRNA:   3'- -GUCGUUGCG--CGa-CCGg---UUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 110382 0.66 0.911669
Target:  5'- -cGCAugGCGCU-GC--GGCUGgACCg -3'
miRNA:   3'- guCGUugCGCGAcCGguUCGACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 34939 0.66 0.911669
Target:  5'- gGGCGGCcgGCGCgacccgGGCCcGGCg--GCCu -3'
miRNA:   3'- gUCGUUG--CGCGa-----CCGGuUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 105475 0.66 0.911059
Target:  5'- uCAGCuccucggGGCGCGCgGGCCccGAGCcc-GCCg -3'
miRNA:   3'- -GUCG-------UUGCGCGaCCGG--UUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 88180 0.66 0.911059
Target:  5'- gGGCGACgccggcgGCGCcGGCgAGGCgg-GCCg -3'
miRNA:   3'- gUCGUUG-------CGCGaCCGgUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 116158 0.66 0.909212
Target:  5'- aAGCAGCGCGCggucgcGGCCGcguccccgacgccGCUGggcgcgucGCCg -3'
miRNA:   3'- gUCGUUGCGCGa-----CCGGUu------------CGACa-------UGG- -5'
23767 3' -55.2 NC_005261.1 + 106917 0.66 0.905453
Target:  5'- -cGCGGCGCGCUgcagGGCCGccAGCg--ACa -3'
miRNA:   3'- guCGUUGCGCGA----CCGGU--UCGacaUGg -5'
23767 3' -55.2 NC_005261.1 + 101689 0.66 0.905453
Target:  5'- cCGGCGaaGCGgGCgUGGUCGaagcgcuccAGCUGcGCCa -3'
miRNA:   3'- -GUCGU--UGCgCG-ACCGGU---------UCGACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 134202 0.66 0.905453
Target:  5'- gCGGCucgGCGCGCgGGUCGcGGCg--GCCg -3'
miRNA:   3'- -GUCGu--UGCGCGaCCGGU-UCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 118679 0.66 0.905453
Target:  5'- gGGCGGCggGCGCUGGCgCAcgcgcGGCgugGU-CCu -3'
miRNA:   3'- gUCGUUG--CGCGACCG-GU-----UCGa--CAuGG- -5'
23767 3' -55.2 NC_005261.1 + 43498 0.66 0.905453
Target:  5'- gCGGCGGaccuccUGCGCUGcGCCAGcGCcGUgACCg -3'
miRNA:   3'- -GUCGUU------GCGCGAC-CGGUU-CGaCA-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.