miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 112670 0.66 0.88535
Target:  5'- gAGCGGCuggaGCGCgaggGGCUggGCgucgaggccGUGCCc -3'
miRNA:   3'- gUCGUUG----CGCGa---CCGGuuCGa--------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 106990 0.66 0.89229
Target:  5'- -cGCAcCGCGUcGGCCAGGUcc-GCCg -3'
miRNA:   3'- guCGUuGCGCGaCCGGUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 98747 0.66 0.89229
Target:  5'- -cGCGG-GCGUUGGCCGcGCgGUuGCCg -3'
miRNA:   3'- guCGUUgCGCGACCGGUuCGaCA-UGG- -5'
23767 3' -55.2 NC_005261.1 + 55798 0.66 0.891607
Target:  5'- -cGCGGCGCGC-GGCCuucgccgccguaaAGGCgUGUAUa -3'
miRNA:   3'- guCGUUGCGCGaCCGG-------------UUCG-ACAUGg -5'
23767 3' -55.2 NC_005261.1 + 114059 0.66 0.89229
Target:  5'- aGGaCGugGCGCggcucagcgGcGCCGAGCUGgaguuuUACCg -3'
miRNA:   3'- gUC-GUugCGCGa--------C-CGGUUCGAC------AUGG- -5'
23767 3' -55.2 NC_005261.1 + 132365 0.66 0.89229
Target:  5'- -cGCGGCGCGCUcGCCGcgcucgcggcGCUGUuCCc -3'
miRNA:   3'- guCGUUGCGCGAcCGGUu---------CGACAuGG- -5'
23767 3' -55.2 NC_005261.1 + 29312 0.66 0.88535
Target:  5'- cCGGCAGCGCGCcgccGCCGcccGGCcgcGUGCg -3'
miRNA:   3'- -GUCGUUGCGCGac--CGGU---UCGa--CAUGg -5'
23767 3' -55.2 NC_005261.1 + 51490 0.66 0.911669
Target:  5'- cCGGCGcCGCGCcccugaugcucGGCCAGauGCUGggcGCCg -3'
miRNA:   3'- -GUCGUuGCGCGa----------CCGGUU--CGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 22659 0.66 0.88535
Target:  5'- uGGCGGCGC-CUGGgCGGcGCccgaGUGCCg -3'
miRNA:   3'- gUCGUUGCGcGACCgGUU-CGa---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 92608 0.66 0.88535
Target:  5'- -cGCGGCGCGUgccggGGCCccgggcgcgaGAGCgggACCg -3'
miRNA:   3'- guCGUUGCGCGa----CCGG----------UUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 99240 0.66 0.88535
Target:  5'- uCGGCGuCGCGCccGCCGGGCcgcGUAUCa -3'
miRNA:   3'- -GUCGUuGCGCGacCGGUUCGa--CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 31970 0.66 0.88535
Target:  5'- uGGCcACGCGCcugGGCCcgcgcaccGCgGUGCCc -3'
miRNA:   3'- gUCGuUGCGCGa--CCGGuu------CGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 99352 0.66 0.89229
Target:  5'- gCAGCAGCGCGCacgugacgaGGUCcAGCgcguugACCg -3'
miRNA:   3'- -GUCGUUGCGCGa--------CCGGuUCGaca---UGG- -5'
23767 3' -55.2 NC_005261.1 + 43468 0.66 0.89229
Target:  5'- gGGCGG-GUGCUGGCgGAGUgcgagGCCu -3'
miRNA:   3'- gUCGUUgCGCGACCGgUUCGaca--UGG- -5'
23767 3' -55.2 NC_005261.1 + 108229 0.66 0.89229
Target:  5'- cCAGCAugGCGCacguGCCcGGCgUGaACCc -3'
miRNA:   3'- -GUCGUugCGCGac--CGGuUCG-ACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 100702 0.66 0.89229
Target:  5'- -cGCGGCGCGCgccGcCCGAGCcGcgGCCg -3'
miRNA:   3'- guCGUUGCGCGac-C-GGUUCGaCa-UGG- -5'
23767 3' -55.2 NC_005261.1 + 15551 0.66 0.88535
Target:  5'- -cGCGACGCGCgGGCaggAGGCgaacgcgGUcGCCu -3'
miRNA:   3'- guCGUUGCGCGaCCGg--UUCGa------CA-UGG- -5'
23767 3' -55.2 NC_005261.1 + 103077 0.66 0.89229
Target:  5'- cCAGCAcCGcCGCgaaGGCCGGGCccaGCCc -3'
miRNA:   3'- -GUCGUuGC-GCGa--CCGGUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 113039 0.66 0.89229
Target:  5'- gGGCcGCGCGC-GGCguGGCgc-GCCa -3'
miRNA:   3'- gUCGuUGCGCGaCCGguUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 137523 0.66 0.88535
Target:  5'- uGGCuGCGCccaUGGCCAccaagguuGGCUugGUGCCa -3'
miRNA:   3'- gUCGuUGCGcg-ACCGGU--------UCGA--CAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.