miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 134373 0.66 0.898333
Target:  5'- gGGCGGCGcCGCUGGCgacggcgaGAGCgggaucaggaaggUGUGCg -3'
miRNA:   3'- gUCGUUGC-GCGACCGg-------UUCG-------------ACAUGg -5'
23767 3' -55.2 NC_005261.1 + 92608 0.66 0.88535
Target:  5'- -cGCGGCGCGUgccggGGCCccgggcgcgaGAGCgggACCg -3'
miRNA:   3'- guCGUUGCGCGa----CCGG----------UUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 113039 0.66 0.89229
Target:  5'- gGGCcGCGCGC-GGCguGGCgc-GCCa -3'
miRNA:   3'- gUCGuUGCGCGaCCGguUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 41536 0.66 0.898993
Target:  5'- cCAGCccCG-GCUGGCCcguGGCgGUGCg -3'
miRNA:   3'- -GUCGuuGCgCGACCGGu--UCGaCAUGg -5'
23767 3' -55.2 NC_005261.1 + 31875 0.66 0.898993
Target:  5'- cCGGCGccuucGCGCGCgccgaGGCCGcuuacgcgcGGCUcUACCc -3'
miRNA:   3'- -GUCGU-----UGCGCGa----CCGGU---------UCGAcAUGG- -5'
23767 3' -55.2 NC_005261.1 + 59019 0.66 0.898993
Target:  5'- cCAGCGGCGCc---GCCAGGaacggGUGCCg -3'
miRNA:   3'- -GUCGUUGCGcgacCGGUUCga---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 132365 0.66 0.89229
Target:  5'- -cGCGGCGCGCUcGCCGcgcucgcggcGCUGUuCCc -3'
miRNA:   3'- guCGUUGCGCGAcCGGUu---------CGACAuGG- -5'
23767 3' -55.2 NC_005261.1 + 107492 0.66 0.898993
Target:  5'- uCAGCGGCaGCaGCUGcGCCAcGCag-GCCg -3'
miRNA:   3'- -GUCGUUG-CG-CGAC-CGGUuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 108229 0.66 0.89229
Target:  5'- cCAGCAugGCGCacguGCCcGGCgUGaACCc -3'
miRNA:   3'- -GUCGUugCGCGac--CGGuUCG-ACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 71196 0.66 0.898993
Target:  5'- -cGCGGgGCGC-GGCC-AGCUGcGCg -3'
miRNA:   3'- guCGUUgCGCGaCCGGuUCGACaUGg -5'
23767 3' -55.2 NC_005261.1 + 103077 0.66 0.89229
Target:  5'- cCAGCAcCGcCGCgaaGGCCGGGCccaGCCc -3'
miRNA:   3'- -GUCGUuGC-GCGa--CCGGUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 29312 0.66 0.88535
Target:  5'- cCGGCAGCGCGCcgccGCCGcccGGCcgcGUGCg -3'
miRNA:   3'- -GUCGUUGCGCGac--CGGU---UCGa--CAUGg -5'
23767 3' -55.2 NC_005261.1 + 40047 0.66 0.898993
Target:  5'- cCAGCGugGCGacgGGCCcguGCUGgaGCa -3'
miRNA:   3'- -GUCGUugCGCga-CCGGuu-CGACa-UGg -5'
23767 3' -55.2 NC_005261.1 + 1060 0.66 0.898993
Target:  5'- uUAGCGGCGCgggggGCUGGCCccgcuccaGGGCga-GCCc -3'
miRNA:   3'- -GUCGUUGCG-----CGACCGG--------UUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 27734 0.66 0.898993
Target:  5'- gAGCGgagACGCGCgggcagagGaGCCGAGCUa-GCCa -3'
miRNA:   3'- gUCGU---UGCGCGa-------C-CGGUUCGAcaUGG- -5'
23767 3' -55.2 NC_005261.1 + 15551 0.66 0.88535
Target:  5'- -cGCGACGCGCgGGCaggAGGCgaacgcgGUcGCCu -3'
miRNA:   3'- guCGUUGCGCGaCCGg--UUCGa------CA-UGG- -5'
23767 3' -55.2 NC_005261.1 + 59448 0.66 0.898993
Target:  5'- cCGGCAGCaGCGC-GGCCGcggcgucggggGGCaGcGCCg -3'
miRNA:   3'- -GUCGUUG-CGCGaCCGGU-----------UCGaCaUGG- -5'
23767 3' -55.2 NC_005261.1 + 73761 0.66 0.898993
Target:  5'- aCGGCcgcuucuacGAgGCGCUGGCCu-GCgacGUGCg -3'
miRNA:   3'- -GUCG---------UUgCGCGACCGGuuCGa--CAUGg -5'
23767 3' -55.2 NC_005261.1 + 122632 0.66 0.898993
Target:  5'- aCGGCGA-GCGCgaGGCCcGGCgcgcGUACg -3'
miRNA:   3'- -GUCGUUgCGCGa-CCGGuUCGa---CAUGg -5'
23767 3' -55.2 NC_005261.1 + 43468 0.66 0.89229
Target:  5'- gGGCGG-GUGCUGGCgGAGUgcgagGCCu -3'
miRNA:   3'- gUCGUUgCGCGACCGgUUCGaca--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.