miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 123842 0.66 0.905453
Target:  5'- gCAGCGuCGCGCU-GCCuAGCggcaGCCg -3'
miRNA:   3'- -GUCGUuGCGCGAcCGGuUCGaca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 4536 0.66 0.911669
Target:  5'- gCGGCGaggGCGCcgggccCUGGCCuuGGCUGgauCCg -3'
miRNA:   3'- -GUCGU---UGCGc-----GACCGGu-UCGACau-GG- -5'
23767 3' -55.2 NC_005261.1 + 73761 0.66 0.898993
Target:  5'- aCGGCcgcuucuacGAgGCGCUGGCCu-GCgacGUGCg -3'
miRNA:   3'- -GUCG---------UUgCGCGACCGGuuCGa--CAUGg -5'
23767 3' -55.2 NC_005261.1 + 134202 0.66 0.905453
Target:  5'- gCGGCucgGCGCGCgGGUCGcGGCg--GCCg -3'
miRNA:   3'- -GUCGu--UGCGCGaCCGGU-UCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 36908 0.66 0.911669
Target:  5'- -cGCGAcccCGCGCUgGGCCGGGaC-GUACUc -3'
miRNA:   3'- guCGUU---GCGCGA-CCGGUUC-GaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 114059 0.66 0.89229
Target:  5'- aGGaCGugGCGCggcucagcgGcGCCGAGCUGgaguuuUACCg -3'
miRNA:   3'- gUC-GUugCGCGa--------C-CGGUUCGAC------AUGG- -5'
23767 3' -55.2 NC_005261.1 + 75321 0.66 0.89229
Target:  5'- uCGGCGGCGCGCgGaGCCcuGUg--ACCu -3'
miRNA:   3'- -GUCGUUGCGCGaC-CGGuuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 6188 0.66 0.898993
Target:  5'- cUAGguGCGaggGCgGGCCcAGCUGgcCCg -3'
miRNA:   3'- -GUCguUGCg--CGaCCGGuUCGACauGG- -5'
23767 3' -55.2 NC_005261.1 + 43498 0.66 0.905453
Target:  5'- gCGGCGGaccuccUGCGCUGcGCCAGcGCcGUgACCg -3'
miRNA:   3'- -GUCGUU------GCGCGAC-CGGUU-CGaCA-UGG- -5'
23767 3' -55.2 NC_005261.1 + 55798 0.66 0.891607
Target:  5'- -cGCGGCGCGC-GGCCuucgccgccguaaAGGCgUGUAUa -3'
miRNA:   3'- guCGUUGCGCGaCCGG-------------UUCG-ACAUGg -5'
23767 3' -55.2 NC_005261.1 + 22659 0.66 0.88535
Target:  5'- uGGCGGCGC-CUGGgCGGcGCccgaGUGCCg -3'
miRNA:   3'- gUCGUUGCGcGACCgGUU-CGa---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 59448 0.66 0.898993
Target:  5'- cCGGCAGCaGCGC-GGCCGcggcgucggggGGCaGcGCCg -3'
miRNA:   3'- -GUCGUUG-CGCGaCCGGU-----------UCGaCaUGG- -5'
23767 3' -55.2 NC_005261.1 + 112454 0.66 0.911669
Target:  5'- -uGCGACGUGCgGGCCGuGCUaaACa -3'
miRNA:   3'- guCGUUGCGCGaCCGGUuCGAcaUGg -5'
23767 3' -55.2 NC_005261.1 + 110382 0.66 0.911669
Target:  5'- -cGCAugGCGCU-GC--GGCUGgACCg -3'
miRNA:   3'- guCGUugCGCGAcCGguUCGACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 112670 0.66 0.88535
Target:  5'- gAGCGGCuggaGCGCgaggGGCUggGCgucgaggccGUGCCc -3'
miRNA:   3'- gUCGUUG----CGCGa---CCGGuuCGa--------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 118002 0.66 0.897007
Target:  5'- aCGGCGGCgGCGCUGGac--GCUGUcggacgcacgcgggGCCc -3'
miRNA:   3'- -GUCGUUG-CGCGACCgguuCGACA--------------UGG- -5'
23767 3' -55.2 NC_005261.1 + 92608 0.66 0.88535
Target:  5'- -cGCGGCGCGUgccggGGCCccgggcgcgaGAGCgggACCg -3'
miRNA:   3'- guCGUUGCGCGa----CCGG----------UUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 118679 0.66 0.905453
Target:  5'- gGGCGGCggGCGCUGGCgCAcgcgcGGCgugGU-CCu -3'
miRNA:   3'- gUCGUUG--CGCGACCG-GU-----UCGa--CAuGG- -5'
23767 3' -55.2 NC_005261.1 + 59019 0.66 0.898993
Target:  5'- cCAGCGGCGCc---GCCAGGaacggGUGCCg -3'
miRNA:   3'- -GUCGUUGCGcgacCGGUUCga---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 105475 0.66 0.911059
Target:  5'- uCAGCuccucggGGCGCGCgGGCCccGAGCcc-GCCg -3'
miRNA:   3'- -GUCG-------UUGCGCGaCCGG--UUCGacaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.