miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 106917 0.66 0.905453
Target:  5'- -cGCGGCGCGCUgcagGGCCGccAGCg--ACa -3'
miRNA:   3'- guCGUUGCGCGA----CCGGU--UCGacaUGg -5'
23767 3' -55.2 NC_005261.1 + 40047 0.66 0.898993
Target:  5'- cCAGCGugGCGacgGGCCcguGCUGgaGCa -3'
miRNA:   3'- -GUCGUugCGCga-CCGGuu-CGACa-UGg -5'
23767 3' -55.2 NC_005261.1 + 73761 0.66 0.898993
Target:  5'- aCGGCcgcuucuacGAgGCGCUGGCCu-GCgacGUGCg -3'
miRNA:   3'- -GUCG---------UUgCGCGACCGGuuCGa--CAUGg -5'
23767 3' -55.2 NC_005261.1 + 97180 0.67 0.863144
Target:  5'- -cGCGG-GCGCcGGCCGGGCcGcgGCCg -3'
miRNA:   3'- guCGUUgCGCGaCCGGUUCGaCa-UGG- -5'
23767 3' -55.2 NC_005261.1 + 29971 0.67 0.878175
Target:  5'- aGGCGGCGCGgUGcGCCGccGGCgcguCCg -3'
miRNA:   3'- gUCGUUGCGCgAC-CGGU--UCGacauGG- -5'
23767 3' -55.2 NC_005261.1 + 132536 0.67 0.846428
Target:  5'- gAGCGcgcccucGCGCGCgagGGCgAGGCgcaGUACg -3'
miRNA:   3'- gUCGU-------UGCGCGa--CCGgUUCGa--CAUGg -5'
23767 3' -55.2 NC_005261.1 + 89155 0.67 0.847245
Target:  5'- -uGCGACGUGgaGGUCAA-CUGcACCg -3'
miRNA:   3'- guCGUUGCGCgaCCGGUUcGACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 44469 0.67 0.870771
Target:  5'- gAGCuGCuGCGCUGcuUCAAGCUGgcCCg -3'
miRNA:   3'- gUCGuUG-CGCGACc-GGUUCGACauGG- -5'
23767 3' -55.2 NC_005261.1 + 42354 0.67 0.870771
Target:  5'- -uGCugGGCGgGCUGGCCGcGCaaacguacugGUGCCg -3'
miRNA:   3'- guCG--UUGCgCGACCGGUuCGa---------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 118145 0.67 0.863144
Target:  5'- cCGGCucGCGCagacGCUGGCCGucgcggcggGGCU-UGCCg -3'
miRNA:   3'- -GUCGu-UGCG----CGACCGGU---------UCGAcAUGG- -5'
23767 3' -55.2 NC_005261.1 + 13693 0.67 0.870771
Target:  5'- gGGCGugGgGCgGGgCGGGCUGgggGCg -3'
miRNA:   3'- gUCGUugCgCGaCCgGUUCGACa--UGg -5'
23767 3' -55.2 NC_005261.1 + 15999 0.67 0.870771
Target:  5'- gGGCAGCGCGCUGu---AGUUGacguUGCCg -3'
miRNA:   3'- gUCGUUGCGCGACcgguUCGAC----AUGG- -5'
23767 3' -55.2 NC_005261.1 + 60696 0.67 0.878175
Target:  5'- gAGCAcacgccGCGCGUggcGGCgCAcGGCgGUGCCa -3'
miRNA:   3'- gUCGU------UGCGCGa--CCG-GU-UCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 82585 0.67 0.847245
Target:  5'- -cGCAGCgcguccucguuGCGCUGGuCCGGGCgcGUgaGCCg -3'
miRNA:   3'- guCGUUG-----------CGCGACC-GGUUCGa-CA--UGG- -5'
23767 3' -55.2 NC_005261.1 + 64409 0.67 0.881073
Target:  5'- cCAGCAGCGCGUcGGCguccaccgccacgcgCGcGUUGUGCa -3'
miRNA:   3'- -GUCGUUGCGCGaCCG---------------GUuCGACAUGg -5'
23767 3' -55.2 NC_005261.1 + 46991 0.67 0.878175
Target:  5'- cCGGCAGCGCGCgccGcGCCGccgcgaugcGGCgGU-CCa -3'
miRNA:   3'- -GUCGUUGCGCGa--C-CGGU---------UCGaCAuGG- -5'
23767 3' -55.2 NC_005261.1 + 136613 0.67 0.863144
Target:  5'- gAGCGGCGCGCgcgcGCCGagGGCggcgGgaagGCCu -3'
miRNA:   3'- gUCGUUGCGCGac--CGGU--UCGa---Ca---UGG- -5'
23767 3' -55.2 NC_005261.1 + 98789 0.67 0.863144
Target:  5'- cCGGCcGCGCGUgcgaaacgGGUCGccGGCggcGUGCCg -3'
miRNA:   3'- -GUCGuUGCGCGa-------CCGGU--UCGa--CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 70171 0.67 0.870771
Target:  5'- gCAGCAGgGCGCgggagcGGCC--GCUGUGg- -3'
miRNA:   3'- -GUCGUUgCGCGa-----CCGGuuCGACAUgg -5'
23767 3' -55.2 NC_005261.1 + 37193 0.67 0.870771
Target:  5'- uGGCGGCGCuGCUGGCgGcGCU--ACUg -3'
miRNA:   3'- gUCGUUGCG-CGACCGgUuCGAcaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.