miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 2384 0.81 0.19477
Target:  5'- gCAGCGGCGCGCUGGCggCGAGCgc-GCCc -3'
miRNA:   3'- -GUCGUUGCGCGACCG--GUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 94182 0.81 0.19477
Target:  5'- cCAGCGugGCGCggugcgcGGCCAGGaaGUGCCg -3'
miRNA:   3'- -GUCGUugCGCGa------CCGGUUCgaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 4407 0.8 0.215503
Target:  5'- gCGGCGGCGCGCUgccgGGCCAGGCcucGCCg -3'
miRNA:   3'- -GUCGUUGCGCGA----CCGGUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 37250 0.79 0.250122
Target:  5'- uGGaCAGCGCGgagaccaucCUGGCCGAGCcGUGCCg -3'
miRNA:   3'- gUC-GUUGCGC---------GACCGGUUCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 38685 0.78 0.275669
Target:  5'- cCAGUcuCGCGCUGGCCGGGCccaaGCCg -3'
miRNA:   3'- -GUCGuuGCGCGACCGGUUCGaca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 88215 0.78 0.282373
Target:  5'- cCGGCaAGCGCGC-GGCCGAGUcGUACUa -3'
miRNA:   3'- -GUCG-UUGCGCGaCCGGUUCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 89943 0.78 0.303258
Target:  5'- gCGGUGGCGCgGCUGGCCGGGaucacaGUGCCg -3'
miRNA:   3'- -GUCGUUGCG-CGACCGGUUCga----CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 133900 0.78 0.31048
Target:  5'- -cGCGGCGCGCugcUGGCCuggcuGCUGUACg -3'
miRNA:   3'- guCGUUGCGCG---ACCGGuu---CGACAUGg -5'
23767 3' -55.2 NC_005261.1 + 65548 0.77 0.340665
Target:  5'- gCAGCAGCGCGU--GCCAGGCguccaugaaGUGCCg -3'
miRNA:   3'- -GUCGUUGCGCGacCGGUUCGa--------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 122042 0.76 0.356536
Target:  5'- gCGGCAcuGCGCGCggaUGGCCGAGaucaUGUACg -3'
miRNA:   3'- -GUCGU--UGCGCG---ACCGGUUCg---ACAUGg -5'
23767 3' -55.2 NC_005261.1 + 37877 0.76 0.364664
Target:  5'- uGGCGgcGCGUGCUGGagcCCGAGCUG-GCCa -3'
miRNA:   3'- gUCGU--UGCGCGACC---GGUUCGACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 54322 0.76 0.3813
Target:  5'- cCAGCAAgGCG-UGGCCGAGCgcGUACa -3'
miRNA:   3'- -GUCGUUgCGCgACCGGUUCGa-CAUGg -5'
23767 3' -55.2 NC_005261.1 + 88826 0.76 0.3813
Target:  5'- gCGGCGGCGCGCgccGGCCcGGCgucgGcUACCu -3'
miRNA:   3'- -GUCGUUGCGCGa--CCGGuUCGa---C-AUGG- -5'
23767 3' -55.2 NC_005261.1 + 99470 0.76 0.3813
Target:  5'- -cGCGGCgGCGCUGGCC--GCUGcgGCCa -3'
miRNA:   3'- guCGUUG-CGCGACCGGuuCGACa-UGG- -5'
23767 3' -55.2 NC_005261.1 + 112176 0.75 0.407186
Target:  5'- cCGGCcGCGCGCggggcucgcUGGCC-AGCUGcUACCu -3'
miRNA:   3'- -GUCGuUGCGCG---------ACCGGuUCGAC-AUGG- -5'
23767 3' -55.2 NC_005261.1 + 31823 0.75 0.434146
Target:  5'- gAGCGgcGCGCGCUGGCgCGcGCcGUGCUg -3'
miRNA:   3'- gUCGU--UGCGCGACCG-GUuCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 119046 0.75 0.44336
Target:  5'- aCGGUAACGCGCccgcGGCCGcGCgUGUGCUu -3'
miRNA:   3'- -GUCGUUGCGCGa---CCGGUuCG-ACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 29827 0.74 0.452683
Target:  5'- -cGCGcCGCGCUcGCCGAGCUGcgcGCCg -3'
miRNA:   3'- guCGUuGCGCGAcCGGUUCGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 99717 0.74 0.462112
Target:  5'- aCGGUcGCGCGCgUGGCCGcgucaGGCgcGUGCCg -3'
miRNA:   3'- -GUCGuUGCGCG-ACCGGU-----UCGa-CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 114349 0.74 0.462112
Target:  5'- gAGCGGCGCGUggccgcGGCCGAGUcGgugGCCg -3'
miRNA:   3'- gUCGUUGCGCGa-----CCGGUUCGaCa--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.