miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 99717 0.74 0.462112
Target:  5'- aCGGUcGCGCGCgUGGCCGcgucaGGCgcGUGCCg -3'
miRNA:   3'- -GUCGuUGCGCG-ACCGGU-----UCGa-CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 60095 0.74 0.462112
Target:  5'- gCAGCAGCaCGCUGGCCA-GCgc-GCCc -3'
miRNA:   3'- -GUCGUUGcGCGACCGGUuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 29905 0.74 0.471644
Target:  5'- gCGGCAGCGCGCgagcGGCUgcgcGAGCUGgcggACg -3'
miRNA:   3'- -GUCGUUGCGCGa---CCGG----UUCGACa---UGg -5'
23767 3' -55.2 NC_005261.1 + 28594 0.74 0.471644
Target:  5'- cCGGCGggccgcccGCGCcgaGCUGGCgGAGCUGUGgCg -3'
miRNA:   3'- -GUCGU--------UGCG---CGACCGgUUCGACAUgG- -5'
23767 3' -55.2 NC_005261.1 + 49176 0.74 0.471644
Target:  5'- aCGGCGGgGUGCUcGGCCAGGCccucgGCCg -3'
miRNA:   3'- -GUCGUUgCGCGA-CCGGUUCGaca--UGG- -5'
23767 3' -55.2 NC_005261.1 + 32188 0.74 0.477411
Target:  5'- gGGCGgcGCGCGCUGGagcuggcgcccgaCGAGCUGccgGCCg -3'
miRNA:   3'- gUCGU--UGCGCGACCg------------GUUCGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 100745 0.74 0.490999
Target:  5'- gCGGCGGCGCGC-GGCaCGAGCUugaaGUagGCCu -3'
miRNA:   3'- -GUCGUUGCGCGaCCG-GUUCGA----CA--UGG- -5'
23767 3' -55.2 NC_005261.1 + 126578 0.74 0.499828
Target:  5'- gCAGCAGCGCGC-GGCaguagcccaaaaaCAGGCccgcGUACCg -3'
miRNA:   3'- -GUCGUUGCGCGaCCG-------------GUUCGa---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 60847 0.74 0.500813
Target:  5'- gCGGCGaggucGCGCGCcgGGCCGAGCccGcGCCg -3'
miRNA:   3'- -GUCGU-----UGCGCGa-CCGGUUCGa-CaUGG- -5'
23767 3' -55.2 NC_005261.1 + 104681 0.73 0.507735
Target:  5'- gCGGCAGCGC-CUgGGCCAccgccccgaagagcGGCUGgacgGCCg -3'
miRNA:   3'- -GUCGUUGCGcGA-CCGGU--------------UCGACa---UGG- -5'
23767 3' -55.2 NC_005261.1 + 77799 0.73 0.510714
Target:  5'- cCGGCGaggGCGCGCccGCCGAGCUGccGCCc -3'
miRNA:   3'- -GUCGU---UGCGCGacCGGUUCGACa-UGG- -5'
23767 3' -55.2 NC_005261.1 + 51750 0.73 0.520695
Target:  5'- gGGCuGC-CGCUGGCCGugaAGCUGgcgcugGCCg -3'
miRNA:   3'- gUCGuUGcGCGACCGGU---UCGACa-----UGG- -5'
23767 3' -55.2 NC_005261.1 + 21180 0.73 0.520695
Target:  5'- -uGCAGC-CGCUGGCgCGAGCgcgGCCg -3'
miRNA:   3'- guCGUUGcGCGACCG-GUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 2686 0.73 0.520695
Target:  5'- cCGGCGGCGCGCcGGCUuuuGGCcgGcGCCg -3'
miRNA:   3'- -GUCGUUGCGCGaCCGGu--UCGa-CaUGG- -5'
23767 3' -55.2 NC_005261.1 + 108720 0.73 0.520695
Target:  5'- aCGGCGaagaGCGCGCgGGCCAgcGGCgGcGCCg -3'
miRNA:   3'- -GUCGU----UGCGCGaCCGGU--UCGaCaUGG- -5'
23767 3' -55.2 NC_005261.1 + 118735 0.73 0.520695
Target:  5'- aCGGCGuCGCGCUcGCCGAGCaccucUGUugCg -3'
miRNA:   3'- -GUCGUuGCGCGAcCGGUUCG-----ACAugG- -5'
23767 3' -55.2 NC_005261.1 + 79641 0.73 0.551066
Target:  5'- gCAGCAGCuCGUUGuccucGCCGAGCUGgcCCu -3'
miRNA:   3'- -GUCGUUGcGCGAC-----CGGUUCGACauGG- -5'
23767 3' -55.2 NC_005261.1 + 38548 0.72 0.570581
Target:  5'- aCAGCGccgGCGCGC-GGCCAugcggcgGGUUGaGCCa -3'
miRNA:   3'- -GUCGU---UGCGCGaCCGGU-------UCGACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 12323 0.72 0.571613
Target:  5'- cCGGCGggcGCGCGCuUGGCCGGcGCg--GCCg -3'
miRNA:   3'- -GUCGU---UGCGCG-ACCGGUU-CGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 74064 0.72 0.571613
Target:  5'- gCGGCAGCuGCGCgacgcGGCCcGGCUuGUGCg -3'
miRNA:   3'- -GUCGUUG-CGCGa----CCGGuUCGA-CAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.