miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 75253 0.72 0.572646
Target:  5'- gGGCAAcCGCGCguacucGGCCuucgagugcgcgguGCUGUGCCu -3'
miRNA:   3'- gUCGUU-GCGCGa-----CCGGuu------------CGACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 93677 0.72 0.581957
Target:  5'- gGGCGGCgGCGCcGGCgGGGCgccggcggGUGCCu -3'
miRNA:   3'- gUCGUUG-CGCGaCCGgUUCGa-------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 131008 0.72 0.591299
Target:  5'- uGGCcACGCGCUucuacguguuccaGGCCGAGCgc-GCCg -3'
miRNA:   3'- gUCGuUGCGCGA-------------CCGGUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 38520 0.72 0.592339
Target:  5'- aGGC-GCGCGCUGGCUgcGCgc-GCCg -3'
miRNA:   3'- gUCGuUGCGCGACCGGuuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 88376 0.72 0.592339
Target:  5'- aCGGCcgAGCGCGCgc-CCAAGgUGUACCu -3'
miRNA:   3'- -GUCG--UUGCGCGaccGGUUCgACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 134316 0.72 0.592339
Target:  5'- -cGCcGCGCuggaGCUGGUCucgcuGCUGUACCg -3'
miRNA:   3'- guCGuUGCG----CGACCGGuu---CGACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 91203 0.72 0.60275
Target:  5'- uCGGCGcCGUGCUGGCCgAGGCccacGCCa -3'
miRNA:   3'- -GUCGUuGCGCGACCGG-UUCGaca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 66537 0.72 0.613185
Target:  5'- gCAGCAcGCGCagcaGCUGGUCG-GCcGUGCCg -3'
miRNA:   3'- -GUCGU-UGCG----CGACCGGUuCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 103668 0.72 0.613185
Target:  5'- cCAGCGACGCccGCgaGGCCGAGCgc--CCg -3'
miRNA:   3'- -GUCGUUGCG--CGa-CCGGUUCGacauGG- -5'
23767 3' -55.2 NC_005261.1 + 53591 0.72 0.617363
Target:  5'- cCGGCGGCGCcccaGCggaccgacgaggccgUGGCCAGGCUccGCCg -3'
miRNA:   3'- -GUCGUUGCG----CG---------------ACCGGUUCGAcaUGG- -5'
23767 3' -55.2 NC_005261.1 + 42690 0.71 0.623634
Target:  5'- cCGGCAGcCGCGC-GGCCGccAGCU--GCCg -3'
miRNA:   3'- -GUCGUU-GCGCGaCCGGU--UCGAcaUGG- -5'
23767 3' -55.2 NC_005261.1 + 98004 0.71 0.63409
Target:  5'- aGGCGGCggggGCGCUGGCgGcgaGGCUGgagacGCCg -3'
miRNA:   3'- gUCGUUG----CGCGACCGgU---UCGACa----UGG- -5'
23767 3' -55.2 NC_005261.1 + 105374 0.71 0.63409
Target:  5'- aGGCGGCGCGCgcgGGUgCGcGCUG-ACCa -3'
miRNA:   3'- gUCGUUGCGCGa--CCG-GUuCGACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 17078 0.71 0.63409
Target:  5'- gGGCGACGgGaugGGCCcGGUggUGUGCCa -3'
miRNA:   3'- gUCGUUGCgCga-CCGGuUCG--ACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 49377 0.71 0.63409
Target:  5'- aGGCugucgcuCGCGCUGGCC-AGC-GUGCa -3'
miRNA:   3'- gUCGuu-----GCGCGACCGGuUCGaCAUGg -5'
23767 3' -55.2 NC_005261.1 + 12570 0.71 0.644545
Target:  5'- gGGCAACGCGg-GGCCGAGagggGcGCCu -3'
miRNA:   3'- gUCGUUGCGCgaCCGGUUCga--CaUGG- -5'
23767 3' -55.2 NC_005261.1 + 125708 0.71 0.644545
Target:  5'- cCGGCGACGgccgcCGCgGGCUcGGCUGggGCCg -3'
miRNA:   3'- -GUCGUUGC-----GCGaCCGGuUCGACa-UGG- -5'
23767 3' -55.2 NC_005261.1 + 63730 0.71 0.654989
Target:  5'- gAGCGGCGUGCgcaUGGCCGcggcGGCguagGCCg -3'
miRNA:   3'- gUCGUUGCGCG---ACCGGU----UCGaca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 104651 0.71 0.654989
Target:  5'- aGGUgacgAACGCGCUGGC-GGGCgUGUGCUn -3'
miRNA:   3'- gUCG----UUGCGCGACCGgUUCG-ACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 59736 0.71 0.662289
Target:  5'- gCGGCGGCGCGC-GGCCGcccuccaccaggcaGGCcuccaUGUGCUc -3'
miRNA:   3'- -GUCGUUGCGCGaCCGGU--------------UCG-----ACAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.