miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 130514 0.71 0.665414
Target:  5'- uGGCGcAgGCGCUGGCCgAAGCgc-GCCc -3'
miRNA:   3'- gUCGU-UgCGCGACCGG-UUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 63057 0.71 0.665414
Target:  5'- gCAGCAGCGCcgcgucGCUGGCgCAcAGCggcggGUACg -3'
miRNA:   3'- -GUCGUUGCG------CGACCG-GU-UCGa----CAUGg -5'
23767 3' -55.2 NC_005261.1 + 50110 0.71 0.672696
Target:  5'- -cGCGcCGCGCagGGCCGccagcagguccacaAGCUGUGCg -3'
miRNA:   3'- guCGUuGCGCGa-CCGGU--------------UCGACAUGg -5'
23767 3' -55.2 NC_005261.1 + 123510 0.71 0.675811
Target:  5'- gCGGCAGugcCGCGUccGCUAgcaAGCUGUACCg -3'
miRNA:   3'- -GUCGUU---GCGCGacCGGU---UCGACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 77676 0.7 0.686171
Target:  5'- -cGCAGgGCGCggacgGGCCGGGCUacgacgGCCc -3'
miRNA:   3'- guCGUUgCGCGa----CCGGUUCGAca----UGG- -5'
23767 3' -55.2 NC_005261.1 + 118935 0.7 0.686171
Target:  5'- gCGGCGccGCGCgGCUGGCCGcGGCgcacgugGCCa -3'
miRNA:   3'- -GUCGU--UGCG-CGACCGGU-UCGaca----UGG- -5'
23767 3' -55.2 NC_005261.1 + 29580 0.7 0.692365
Target:  5'- gCAGCGGCGCGUgcagggcugccggGGCCAcAGCUcGUucaucACCg -3'
miRNA:   3'- -GUCGUUGCGCGa------------CCGGU-UCGA-CA-----UGG- -5'
23767 3' -55.2 NC_005261.1 + 29245 0.7 0.696484
Target:  5'- gCGGCGcCGCGCgacgGGCCGccgccGCUGgaggGCCc -3'
miRNA:   3'- -GUCGUuGCGCGa---CCGGUu----CGACa---UGG- -5'
23767 3' -55.2 NC_005261.1 + 44226 0.7 0.696484
Target:  5'- gAGCGcGCGCuGCUGGCCGcccAGCgcgcgGCCg -3'
miRNA:   3'- gUCGU-UGCG-CGACCGGU---UCGaca--UGG- -5'
23767 3' -55.2 NC_005261.1 + 118320 0.7 0.696484
Target:  5'- -cGCAccGCGCuGCUGGCCAugaccugcgGGCUGcuccucgGCCu -3'
miRNA:   3'- guCGU--UGCG-CGACCGGU---------UCGACa------UGG- -5'
23767 3' -55.2 NC_005261.1 + 125339 0.7 0.696484
Target:  5'- -cGCAGCGCGCagGGCguccagCAGGCUccGCCg -3'
miRNA:   3'- guCGUUGCGCGa-CCG------GUUCGAcaUGG- -5'
23767 3' -55.2 NC_005261.1 + 94670 0.7 0.700594
Target:  5'- gAGCucauucccccuGAgGCGCUGGCCAccgaggacguggccgAGCUGgagcGCCg -3'
miRNA:   3'- gUCG-----------UUgCGCGACCGGU---------------UCGACa---UGG- -5'
23767 3' -55.2 NC_005261.1 + 103326 0.7 0.706741
Target:  5'- gCAGCAGCGCGU---CCAGGCgccgGUACa -3'
miRNA:   3'- -GUCGUUGCGCGaccGGUUCGa---CAUGg -5'
23767 3' -55.2 NC_005261.1 + 11469 0.7 0.706741
Target:  5'- gAGCGG-GCGCggaggGGCgGGGCggggGUGCCg -3'
miRNA:   3'- gUCGUUgCGCGa----CCGgUUCGa---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 45367 0.7 0.706741
Target:  5'- gCAGCGaggaGCGCGUcggGGCCGcccuguucgugcAGCUGUcguGCCu -3'
miRNA:   3'- -GUCGU----UGCGCGa--CCGGU------------UCGACA---UGG- -5'
23767 3' -55.2 NC_005261.1 + 82872 0.7 0.706741
Target:  5'- gCGGCGACgGCGCUGGCgguGGCcucGCCg -3'
miRNA:   3'- -GUCGUUG-CGCGACCGgu-UCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 117477 0.7 0.706741
Target:  5'- gCGGCGACGCGCUG-CUgcGCUucUACCu -3'
miRNA:   3'- -GUCGUUGCGCGACcGGuuCGAc-AUGG- -5'
23767 3' -55.2 NC_005261.1 + 95774 0.7 0.706741
Target:  5'- gAGCcucGCGCGCUGcGCCGGcgcGCUGcuaGCCg -3'
miRNA:   3'- gUCGu--UGCGCGAC-CGGUU---CGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 12031 0.7 0.715916
Target:  5'- -cGCGACGCGCUcGaGCCccagccgGAGCacGUACCg -3'
miRNA:   3'- guCGUUGCGCGA-C-CGG-------UUCGa-CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 45628 0.7 0.715916
Target:  5'- -cGCGGCGCgGCgGGCCcgcgccgGAGCaGUGCCc -3'
miRNA:   3'- guCGUUGCG-CGaCCGG-------UUCGaCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.