miRNA display CGI


Results 21 - 40 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 134202 0.66 0.905453
Target:  5'- gCGGCucgGCGCGCgGGUCGcGGCg--GCCg -3'
miRNA:   3'- -GUCGu--UGCGCGaCCGGU-UCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 13052 0.66 0.905453
Target:  5'- gGGCcGCGCGCgccccuGCCGGGCgcGUccGCCg -3'
miRNA:   3'- gUCGuUGCGCGac----CGGUUCGa-CA--UGG- -5'
23767 3' -55.2 NC_005261.1 + 106917 0.66 0.905453
Target:  5'- -cGCGGCGCGCUgcagGGCCGccAGCg--ACa -3'
miRNA:   3'- guCGUUGCGCGA----CCGGU--UCGacaUGg -5'
23767 3' -55.2 NC_005261.1 + 3445 0.66 0.904181
Target:  5'- aGGCgGGCGCGCgGGCCGccGCgccgcgcgucgaGUACCg -3'
miRNA:   3'- gUCG-UUGCGCGaCCGGUu-CGa-----------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 89210 0.66 0.902898
Target:  5'- aGGcCGACGCG-UGGCCcgacuacaagcuGCUGUGCUu -3'
miRNA:   3'- gUC-GUUGCGCgACCGGuu----------CGACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 115301 0.66 0.901606
Target:  5'- -cGCAACGCGUcGGCgcacgucugcgcgauCGGGggGUACCg -3'
miRNA:   3'- guCGUUGCGCGaCCG---------------GUUCgaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 31875 0.66 0.898993
Target:  5'- cCGGCGccuucGCGCGCgccgaGGCCGcuuacgcgcGGCUcUACCc -3'
miRNA:   3'- -GUCGU-----UGCGCGa----CCGGU---------UCGAcAUGG- -5'
23767 3' -55.2 NC_005261.1 + 59448 0.66 0.898993
Target:  5'- cCGGCAGCaGCGC-GGCCGcggcgucggggGGCaGcGCCg -3'
miRNA:   3'- -GUCGUUG-CGCGaCCGGU-----------UCGaCaUGG- -5'
23767 3' -55.2 NC_005261.1 + 6188 0.66 0.898993
Target:  5'- cUAGguGCGaggGCgGGCCcAGCUGgcCCg -3'
miRNA:   3'- -GUCguUGCg--CGaCCGGuUCGACauGG- -5'
23767 3' -55.2 NC_005261.1 + 122632 0.66 0.898993
Target:  5'- aCGGCGA-GCGCgaGGCCcGGCgcgcGUACg -3'
miRNA:   3'- -GUCGUUgCGCGa-CCGGuUCGa---CAUGg -5'
23767 3' -55.2 NC_005261.1 + 1060 0.66 0.898993
Target:  5'- uUAGCGGCGCgggggGCUGGCCccgcuccaGGGCga-GCCc -3'
miRNA:   3'- -GUCGUUGCG-----CGACCGG--------UUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 27734 0.66 0.898993
Target:  5'- gAGCGgagACGCGCgggcagagGaGCCGAGCUa-GCCa -3'
miRNA:   3'- gUCGU---UGCGCGa-------C-CGGUUCGAcaUGG- -5'
23767 3' -55.2 NC_005261.1 + 40047 0.66 0.898993
Target:  5'- cCAGCGugGCGacgGGCCcguGCUGgaGCa -3'
miRNA:   3'- -GUCGUugCGCga-CCGGuu-CGACa-UGg -5'
23767 3' -55.2 NC_005261.1 + 59019 0.66 0.898993
Target:  5'- cCAGCGGCGCc---GCCAGGaacggGUGCCg -3'
miRNA:   3'- -GUCGUUGCGcgacCGGUUCga---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 41536 0.66 0.898993
Target:  5'- cCAGCccCG-GCUGGCCcguGGCgGUGCg -3'
miRNA:   3'- -GUCGuuGCgCGACCGGu--UCGaCAUGg -5'
23767 3' -55.2 NC_005261.1 + 107492 0.66 0.898993
Target:  5'- uCAGCGGCaGCaGCUGcGCCAcGCag-GCCg -3'
miRNA:   3'- -GUCGUUG-CG-CGAC-CGGUuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 63592 0.66 0.898993
Target:  5'- gAGCGGCGCGg-GGCCcuGUg--GCCg -3'
miRNA:   3'- gUCGUUGCGCgaCCGGuuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 60353 0.66 0.898993
Target:  5'- -cGCGGCcGCGC--GCCAGGCaGUGCUu -3'
miRNA:   3'- guCGUUG-CGCGacCGGUUCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 73761 0.66 0.898993
Target:  5'- aCGGCcgcuucuacGAgGCGCUGGCCu-GCgacGUGCg -3'
miRNA:   3'- -GUCG---------UUgCGCGACCGGuuCGa--CAUGg -5'
23767 3' -55.2 NC_005261.1 + 71196 0.66 0.898993
Target:  5'- -cGCGGgGCGC-GGCC-AGCUGcGCg -3'
miRNA:   3'- guCGUUgCGCGaCCGGuUCGACaUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.