miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 137523 0.66 0.88535
Target:  5'- uGGCuGCGCccaUGGCCAccaagguuGGCUugGUGCCa -3'
miRNA:   3'- gUCGuUGCGcg-ACCGGU--------UCGA--CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 29312 0.66 0.88535
Target:  5'- cCGGCAGCGCGCcgccGCCGcccGGCcgcGUGCg -3'
miRNA:   3'- -GUCGUUGCGCGac--CGGU---UCGa--CAUGg -5'
23767 3' -55.2 NC_005261.1 + 99240 0.66 0.88535
Target:  5'- uCGGCGuCGCGCccGCCGGGCcgcGUAUCa -3'
miRNA:   3'- -GUCGUuGCGCGacCGGUUCGa--CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 64409 0.67 0.881073
Target:  5'- cCAGCAGCGCGUcGGCguccaccgccacgcgCGcGUUGUGCa -3'
miRNA:   3'- -GUCGUUGCGCGaCCG---------------GUuCGACAUGg -5'
23767 3' -55.2 NC_005261.1 + 111806 0.67 0.878175
Target:  5'- uGGCu-CGCGUcGGCCGAGCUcGcGCUu -3'
miRNA:   3'- gUCGuuGCGCGaCCGGUUCGA-CaUGG- -5'
23767 3' -55.2 NC_005261.1 + 46991 0.67 0.878175
Target:  5'- cCGGCAGCGCGCgccGcGCCGccgcgaugcGGCgGU-CCa -3'
miRNA:   3'- -GUCGUUGCGCGa--C-CGGU---------UCGaCAuGG- -5'
23767 3' -55.2 NC_005261.1 + 60696 0.67 0.878175
Target:  5'- gAGCAcacgccGCGCGUggcGGCgCAcGGCgGUGCCa -3'
miRNA:   3'- gUCGU------UGCGCGa--CCG-GU-UCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 136905 0.67 0.878175
Target:  5'- uGGCGugGUGUgGGCCGcGCg--GCCg -3'
miRNA:   3'- gUCGUugCGCGaCCGGUuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 55357 0.67 0.878175
Target:  5'- aAGCAGCG-GCaGGCCcAGcCUGgcCCg -3'
miRNA:   3'- gUCGUUGCgCGaCCGGuUC-GACauGG- -5'
23767 3' -55.2 NC_005261.1 + 56704 0.67 0.878175
Target:  5'- uGGCGGCGaCGCUGcuaagggaccacGCCGAGCgcaucgGcGCCu -3'
miRNA:   3'- gUCGUUGC-GCGAC------------CGGUUCGa-----CaUGG- -5'
23767 3' -55.2 NC_005261.1 + 59292 0.67 0.878175
Target:  5'- cCAGCAGCGCGCaGuGCCccGC-GUcaaACCa -3'
miRNA:   3'- -GUCGUUGCGCGaC-CGGuuCGaCA---UGG- -5'
23767 3' -55.2 NC_005261.1 + 97618 0.67 0.878175
Target:  5'- gGGCGgaGCGgGCggagcgGGCgGAGCgggcgcggGUGCCg -3'
miRNA:   3'- gUCGU--UGCgCGa-----CCGgUUCGa-------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 76787 0.67 0.878175
Target:  5'- -cGCcccCGCGCUGGCgccgcgCGAGCgcuuccUGUACCu -3'
miRNA:   3'- guCGuu-GCGCGACCG------GUUCG------ACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 108163 0.67 0.878175
Target:  5'- gCAGCGcguccgccaggGCGCGCggccgcGGCUccgggcgcgaGAGCUGcGCCa -3'
miRNA:   3'- -GUCGU-----------UGCGCGa-----CCGG----------UUCGACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 29971 0.67 0.878175
Target:  5'- aGGCGGCGCGgUGcGCCGccGGCgcguCCg -3'
miRNA:   3'- gUCGUUGCGCgAC-CGGU--UCGacauGG- -5'
23767 3' -55.2 NC_005261.1 + 64298 0.67 0.878175
Target:  5'- cCAGCGugcgcauguuucGCGuCGC-GGCCGuAGCcGUGCCc -3'
miRNA:   3'- -GUCGU------------UGC-GCGaCCGGU-UCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 46524 0.67 0.87376
Target:  5'- gCAGCAccgccuccgcuGCGCGCUGGCagucgucccgcagcgCGAGCgcUGCUg -3'
miRNA:   3'- -GUCGU-----------UGCGCGACCG---------------GUUCGacAUGG- -5'
23767 3' -55.2 NC_005261.1 + 134865 0.67 0.870771
Target:  5'- aGGCGccCGCGCccccgcgGGCCccuGCUGUGCg -3'
miRNA:   3'- gUCGUu-GCGCGa------CCGGuu-CGACAUGg -5'
23767 3' -55.2 NC_005261.1 + 44967 0.67 0.870771
Target:  5'- -cGgGACGCGCgcgagGGcCCGGGCgg-GCCg -3'
miRNA:   3'- guCgUUGCGCGa----CC-GGUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 48448 0.67 0.870771
Target:  5'- -uGCGugGCGC-GGCCGGcGCgGUcaacGCCg -3'
miRNA:   3'- guCGUugCGCGaCCGGUU-CGaCA----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.