miRNA display CGI


Results 81 - 100 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 42354 0.67 0.870771
Target:  5'- -uGCugGGCGgGCUGGCCGcGCaaacguacugGUGCCg -3'
miRNA:   3'- guCG--UUGCgCGACCGGUuCGa---------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 70171 0.67 0.870771
Target:  5'- gCAGCAGgGCGCgggagcGGCC--GCUGUGg- -3'
miRNA:   3'- -GUCGUUgCGCGa-----CCGGuuCGACAUgg -5'
23767 3' -55.2 NC_005261.1 + 89094 0.67 0.870771
Target:  5'- gCGGCccgGGCGCGCUGGCgCGcGC-GUGgCa -3'
miRNA:   3'- -GUCG---UUGCGCGACCG-GUuCGaCAUgG- -5'
23767 3' -55.2 NC_005261.1 + 44469 0.67 0.870771
Target:  5'- gAGCuGCuGCGCUGcuUCAAGCUGgcCCg -3'
miRNA:   3'- gUCGuUG-CGCGACc-GGUUCGACauGG- -5'
23767 3' -55.2 NC_005261.1 + 134865 0.67 0.870771
Target:  5'- aGGCGccCGCGCccccgcgGGCCccuGCUGUGCg -3'
miRNA:   3'- gUCGUu-GCGCGa------CCGGuu-CGACAUGg -5'
23767 3' -55.2 NC_005261.1 + 13693 0.67 0.870771
Target:  5'- gGGCGugGgGCgGGgCGGGCUGgggGCg -3'
miRNA:   3'- gUCGUugCgCGaCCgGUUCGACa--UGg -5'
23767 3' -55.2 NC_005261.1 + 83685 0.67 0.870771
Target:  5'- -cGCAGCGCGCc-GCCGAGgCgGcGCCg -3'
miRNA:   3'- guCGUUGCGCGacCGGUUC-GaCaUGG- -5'
23767 3' -55.2 NC_005261.1 + 121802 0.67 0.870771
Target:  5'- gGGCAggGgGCGCgUGGCUggGCUcugcggGCCg -3'
miRNA:   3'- gUCGU--UgCGCG-ACCGGuuCGAca----UGG- -5'
23767 3' -55.2 NC_005261.1 + 44967 0.67 0.870771
Target:  5'- -cGgGACGCGCgcgagGGcCCGGGCgg-GCCg -3'
miRNA:   3'- guCgUUGCGCGa----CC-GGUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 48448 0.67 0.870771
Target:  5'- -uGCGugGCGC-GGCCGGcGCgGUcaacGCCg -3'
miRNA:   3'- guCGUugCGCGaCCGGUU-CGaCA----UGG- -5'
23767 3' -55.2 NC_005261.1 + 42206 0.67 0.870771
Target:  5'- aCGGCGcCGCGCgGGCgccccgccgCGAGCUccGCCg -3'
miRNA:   3'- -GUCGUuGCGCGaCCG---------GUUCGAcaUGG- -5'
23767 3' -55.2 NC_005261.1 + 131722 0.67 0.863144
Target:  5'- aGGCGGCGCGCUucGGUgGGuGCUGcACg -3'
miRNA:   3'- gUCGUUGCGCGA--CCGgUU-CGACaUGg -5'
23767 3' -55.2 NC_005261.1 + 98789 0.67 0.863144
Target:  5'- cCGGCcGCGCGUgcgaaacgGGUCGccGGCggcGUGCCg -3'
miRNA:   3'- -GUCGuUGCGCGa-------CCGGU--UCGa--CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 97180 0.67 0.863144
Target:  5'- -cGCGG-GCGCcGGCCGGGCcGcgGCCg -3'
miRNA:   3'- guCGUUgCGCGaCCGGUUCGaCa-UGG- -5'
23767 3' -55.2 NC_005261.1 + 92157 0.67 0.863144
Target:  5'- uCGGCGagcGCGCGCUcGGUgGAGCc--GCCg -3'
miRNA:   3'- -GUCGU---UGCGCGA-CCGgUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 69510 0.67 0.863144
Target:  5'- cCGGCGGCGgGCU-GCCGgAGCUGgcgcggGCg -3'
miRNA:   3'- -GUCGUUGCgCGAcCGGU-UCGACa-----UGg -5'
23767 3' -55.2 NC_005261.1 + 49468 0.67 0.863144
Target:  5'- aGGCgGGCGCGCaGGCCGcgcggaAGCUGcagcagaggagGCCg -3'
miRNA:   3'- gUCG-UUGCGCGaCCGGU------UCGACa----------UGG- -5'
23767 3' -55.2 NC_005261.1 + 98522 0.67 0.863144
Target:  5'- gGGCAgGCGCGagauccGGCCGguaGGCUGcGCCc -3'
miRNA:   3'- gUCGU-UGCGCga----CCGGU---UCGACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 81195 0.67 0.863144
Target:  5'- gGGCAcggcCGCGCgGGCgCGAGCcGgACCa -3'
miRNA:   3'- gUCGUu---GCGCGaCCG-GUUCGaCaUGG- -5'
23767 3' -55.2 NC_005261.1 + 84126 0.67 0.863144
Target:  5'- gGGCAGCGgGCggGGUC--GCUGgcggGCCu -3'
miRNA:   3'- gUCGUUGCgCGa-CCGGuuCGACa---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.