miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 1060 0.66 0.898993
Target:  5'- uUAGCGGCGCgggggGCUGGCCccgcuccaGGGCga-GCCc -3'
miRNA:   3'- -GUCGUUGCG-----CGACCGG--------UUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 1569 0.7 0.720988
Target:  5'- gCAGCGGCGCGCcgagcccccagcgguUGGCgGcgcgguGGCUG-GCCg -3'
miRNA:   3'- -GUCGUUGCGCG---------------ACCGgU------UCGACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 1738 0.69 0.7856
Target:  5'- -cGCggUGCGCgGGcCCAGGCgcgugGCCa -3'
miRNA:   3'- guCGuuGCGCGaCC-GGUUCGaca--UGG- -5'
23767 3' -55.2 NC_005261.1 + 2384 0.81 0.19477
Target:  5'- gCAGCGGCGCGCUGGCggCGAGCgc-GCCc -3'
miRNA:   3'- -GUCGUUGCGCGACCG--GUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 2546 0.68 0.821887
Target:  5'- cCAGCGccGCgGCGCUgGGCgCGGGCgugugGUACUc -3'
miRNA:   3'- -GUCGU--UG-CGCGA-CCG-GUUCGa----CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 2686 0.73 0.520695
Target:  5'- cCGGCGGCGCGCcGGCUuuuGGCcgGcGCCg -3'
miRNA:   3'- -GUCGUUGCGCGaCCGGu--UCGa-CaUGG- -5'
23767 3' -55.2 NC_005261.1 + 3348 0.67 0.838986
Target:  5'- gCGGCGcccgGCGCGCcGGCCuucagggccgcGAGCgcgGCCg -3'
miRNA:   3'- -GUCGU----UGCGCGaCCGG-----------UUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 3445 0.66 0.904181
Target:  5'- aGGCgGGCGCGCgGGCCGccGCgccgcgcgucgaGUACCg -3'
miRNA:   3'- gUCG-UUGCGCGaCCGGUu-CGa-----------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 4407 0.8 0.215503
Target:  5'- gCGGCGGCGCGCUgccgGGCCAGGCcucGCCg -3'
miRNA:   3'- -GUCGUUGCGCGA----CCGGUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 4536 0.66 0.911669
Target:  5'- gCGGCGaggGCGCcgggccCUGGCCuuGGCUGgauCCg -3'
miRNA:   3'- -GUCGU---UGCGc-----GACCGGu-UCGACau-GG- -5'
23767 3' -55.2 NC_005261.1 + 5139 0.69 0.747012
Target:  5'- cCGGCGcucGCGCGCcucGGCCcGGCgg-GCCg -3'
miRNA:   3'- -GUCGU---UGCGCGa--CCGGuUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 6188 0.66 0.898993
Target:  5'- cUAGguGCGaggGCgGGCCcAGCUGgcCCg -3'
miRNA:   3'- -GUCguUGCg--CGaCCGGuUCGACauGG- -5'
23767 3' -55.2 NC_005261.1 + 10497 0.69 0.737077
Target:  5'- cCGGCuuuuGCGCGC-GGCCGccGCUGcggGCCc -3'
miRNA:   3'- -GUCGu---UGCGCGaCCGGUu-CGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 11469 0.7 0.706741
Target:  5'- gAGCGG-GCGCggaggGGCgGGGCggggGUGCCg -3'
miRNA:   3'- gUCGUUgCGCGa----CCGgUUCGa---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 12031 0.7 0.715916
Target:  5'- -cGCGACGCGCUcGaGCCccagccgGAGCacGUACCg -3'
miRNA:   3'- guCGUUGCGCGA-C-CGG-------UUCGa-CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 12323 0.72 0.571613
Target:  5'- cCGGCGggcGCGCGCuUGGCCGGcGCg--GCCg -3'
miRNA:   3'- -GUCGU---UGCGCG-ACCGGUU-CGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 12513 0.66 0.911669
Target:  5'- gGGCGAcCGCGCggGGCCccGCgccGCCg -3'
miRNA:   3'- gUCGUU-GCGCGa-CCGGuuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 12570 0.71 0.644545
Target:  5'- gGGCAACGCGg-GGCCGAGagggGcGCCu -3'
miRNA:   3'- gUCGUUGCGCgaCCGGUUCga--CaUGG- -5'
23767 3' -55.2 NC_005261.1 + 12884 0.67 0.8553
Target:  5'- gAGCGGCuCGUUGGUCGgcaGGCUGguguacACCg -3'
miRNA:   3'- gUCGUUGcGCGACCGGU---UCGACa-----UGG- -5'
23767 3' -55.2 NC_005261.1 + 13052 0.66 0.905453
Target:  5'- gGGCcGCGCGCgccccuGCCGGGCgcGUccGCCg -3'
miRNA:   3'- gUCGuUGCGCGac----CGGUUCGa-CA--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.