miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 13096 0.66 0.911669
Target:  5'- gGGCGGCGgGCUcGGCUcggGGGCgucgGcgGCCg -3'
miRNA:   3'- gUCGUUGCgCGA-CCGG---UUCGa---Ca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 13348 0.66 0.911669
Target:  5'- cCAGCggUcgGCGgaGGCUggGCgGcACCg -3'
miRNA:   3'- -GUCGuuG--CGCgaCCGGuuCGaCaUGG- -5'
23767 3' -55.2 NC_005261.1 + 13693 0.67 0.870771
Target:  5'- gGGCGugGgGCgGGgCGGGCUGgggGCg -3'
miRNA:   3'- gUCGUugCgCGaCCgGUUCGACa--UGg -5'
23767 3' -55.2 NC_005261.1 + 14373 0.69 0.766555
Target:  5'- gGGCGGCGCGgUGGCCc-GCaucGCCa -3'
miRNA:   3'- gUCGUUGCGCgACCGGuuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 14942 0.7 0.716932
Target:  5'- cCAGCug-GCGCUGGaagCGAGCgggcGUGCCu -3'
miRNA:   3'- -GUCGuugCGCGACCg--GUUCGa---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 14975 0.67 0.847245
Target:  5'- gGGCGACuGCGC-GGCCGcGCcg-GCCg -3'
miRNA:   3'- gUCGUUG-CGCGaCCGGUuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 15551 0.66 0.88535
Target:  5'- -cGCGACGCGCgGGCaggAGGCgaacgcgGUcGCCu -3'
miRNA:   3'- guCGUUGCGCGaCCGg--UUCGa------CA-UGG- -5'
23767 3' -55.2 NC_005261.1 + 15999 0.67 0.870771
Target:  5'- gGGCAGCGCGCUGu---AGUUGacguUGCCg -3'
miRNA:   3'- gUCGUUGCGCGACcgguUCGAC----AUGG- -5'
23767 3' -55.2 NC_005261.1 + 17078 0.71 0.63409
Target:  5'- gGGCGACGgGaugGGCCcGGUggUGUGCCa -3'
miRNA:   3'- gUCGUUGCgCga-CCGGuUCG--ACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 18674 0.69 0.756841
Target:  5'- cCAGCGG-GCGaaggGGCCccAGGCUGUugCg -3'
miRNA:   3'- -GUCGUUgCGCga--CCGG--UUCGACAugG- -5'
23767 3' -55.2 NC_005261.1 + 20113 0.68 0.810382
Target:  5'- gCGGCAagGCGCGCgGGCCcgcagcggcuccgcGAGCgcucagGCCg -3'
miRNA:   3'- -GUCGU--UGCGCGaCCGG--------------UUCGaca---UGG- -5'
23767 3' -55.2 NC_005261.1 + 21180 0.73 0.520695
Target:  5'- -uGCAGC-CGCUGGCgCGAGCgcgGCCg -3'
miRNA:   3'- guCGUUGcGCGACCG-GUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 21800 0.68 0.821887
Target:  5'- -cGCAGC-CGCcGGCCGGGCcGgGCCc -3'
miRNA:   3'- guCGUUGcGCGaCCGGUUCGaCaUGG- -5'
23767 3' -55.2 NC_005261.1 + 22659 0.66 0.88535
Target:  5'- uGGCGGCGC-CUGGgCGGcGCccgaGUGCCg -3'
miRNA:   3'- gUCGUUGCGcGACCgGUU-CGa---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 23190 0.68 0.794911
Target:  5'- aCAGCgAGCGCGCcgcggGGCCcgcAGCggcgGCCg -3'
miRNA:   3'- -GUCG-UUGCGCGa----CCGGu--UCGaca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 24527 0.68 0.825367
Target:  5'- gAGCAAgGUGUccccgcccacguaccUGGCCGGGCgGcGCCa -3'
miRNA:   3'- gUCGUUgCGCG---------------ACCGGUUCGaCaUGG- -5'
23767 3' -55.2 NC_005261.1 + 27734 0.66 0.898993
Target:  5'- gAGCGgagACGCGCgggcagagGaGCCGAGCUa-GCCa -3'
miRNA:   3'- gUCGU---UGCGCGa-------C-CGGUUCGAcaUGG- -5'
23767 3' -55.2 NC_005261.1 + 28594 0.74 0.471644
Target:  5'- cCGGCGggccgcccGCGCcgaGCUGGCgGAGCUGUGgCg -3'
miRNA:   3'- -GUCGU--------UGCG---CGACCGgUUCGACAUgG- -5'
23767 3' -55.2 NC_005261.1 + 29245 0.7 0.696484
Target:  5'- gCGGCGcCGCGCgacgGGCCGccgccGCUGgaggGCCc -3'
miRNA:   3'- -GUCGUuGCGCGa---CCGGUu----CGACa---UGG- -5'
23767 3' -55.2 NC_005261.1 + 29312 0.66 0.88535
Target:  5'- cCGGCAGCGCGCcgccGCCGcccGGCcgcGUGCg -3'
miRNA:   3'- -GUCGUUGCGCGac--CGGU---UCGa--CAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.