miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 29580 0.7 0.692365
Target:  5'- gCAGCGGCGCGUgcagggcugccggGGCCAcAGCUcGUucaucACCg -3'
miRNA:   3'- -GUCGUUGCGCGa------------CCGGU-UCGA-CA-----UGG- -5'
23767 3' -55.2 NC_005261.1 + 29827 0.74 0.452683
Target:  5'- -cGCGcCGCGCUcGCCGAGCUGcgcGCCg -3'
miRNA:   3'- guCGUuGCGCGAcCGGUUCGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 29905 0.74 0.471644
Target:  5'- gCGGCAGCGCGCgagcGGCUgcgcGAGCUGgcggACg -3'
miRNA:   3'- -GUCGUUGCGCGa---CCGG----UUCGACa---UGg -5'
23767 3' -55.2 NC_005261.1 + 29971 0.67 0.878175
Target:  5'- aGGCGGCGCGgUGcGCCGccGGCgcguCCg -3'
miRNA:   3'- gUCGUUGCGCgAC-CGGU--UCGacauGG- -5'
23767 3' -55.2 NC_005261.1 + 30160 0.66 0.911669
Target:  5'- uUAGCGGCGcCGCgcccGCCGcGCUGcgcGCCg -3'
miRNA:   3'- -GUCGUUGC-GCGac--CGGUuCGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 30223 0.69 0.756841
Target:  5'- uGGCGGCGCGaaccgUGGCCccgcuGGCgcgGUACUc -3'
miRNA:   3'- gUCGUUGCGCg----ACCGGu----UCGa--CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 31278 0.68 0.830531
Target:  5'- --cCGAgGCGCUGGCCGAGaucgcgGCCc -3'
miRNA:   3'- gucGUUgCGCGACCGGUUCgaca--UGG- -5'
23767 3' -55.2 NC_005261.1 + 31627 0.67 0.863144
Target:  5'- -cGCGACGCGggacCUGGCCuuccgcGGCgcggucgaGUACCu -3'
miRNA:   3'- guCGUUGCGC----GACCGGu-----UCGa-------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 31823 0.75 0.434146
Target:  5'- gAGCGgcGCGCGCUGGCgCGcGCcGUGCUg -3'
miRNA:   3'- gUCGU--UGCGCGACCG-GUuCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 31875 0.66 0.898993
Target:  5'- cCGGCGccuucGCGCGCgccgaGGCCGcuuacgcgcGGCUcUACCc -3'
miRNA:   3'- -GUCGU-----UGCGCGa----CCGGU---------UCGAcAUGG- -5'
23767 3' -55.2 NC_005261.1 + 31970 0.66 0.88535
Target:  5'- uGGCcACGCGCcugGGCCcgcgcaccGCgGUGCCc -3'
miRNA:   3'- gUCGuUGCGCGa--CCGGuu------CGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 32188 0.74 0.477411
Target:  5'- gGGCGgcGCGCGCUGGagcuggcgcccgaCGAGCUGccgGCCg -3'
miRNA:   3'- gUCGU--UGCGCGACCg------------GUUCGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 33516 0.69 0.7856
Target:  5'- gCGGCGGCGgcacCGCUGGCCccGGgaGcACCa -3'
miRNA:   3'- -GUCGUUGC----GCGACCGGu-UCgaCaUGG- -5'
23767 3' -55.2 NC_005261.1 + 34679 0.67 0.8553
Target:  5'- uGGCAGCGCGCUGcGUgAcGgUGgGCCc -3'
miRNA:   3'- gUCGUUGCGCGAC-CGgUuCgACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 34939 0.66 0.911669
Target:  5'- gGGCGGCcgGCGCgacccgGGCCcGGCg--GCCu -3'
miRNA:   3'- gUCGUUG--CGCGa-----CCGGuUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 36644 0.67 0.852905
Target:  5'- aAGcCGGCGCGCgggcuuggGGCCAgggucgaacgcuggGGCgGUGCUg -3'
miRNA:   3'- gUC-GUUGCGCGa-------CCGGU--------------UCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 36908 0.66 0.911669
Target:  5'- -cGCGAcccCGCGCUgGGCCGGGaC-GUACUc -3'
miRNA:   3'- guCGUU---GCGCGA-CCGGUUC-GaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 37193 0.67 0.870771
Target:  5'- uGGCGGCGCuGCUGGCgGcGCU--ACUg -3'
miRNA:   3'- gUCGUUGCG-CGACCGgUuCGAcaUGG- -5'
23767 3' -55.2 NC_005261.1 + 37250 0.79 0.250122
Target:  5'- uGGaCAGCGCGgagaccaucCUGGCCGAGCcGUGCCg -3'
miRNA:   3'- gUC-GUUGCGC---------GACCGGUUCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 37877 0.76 0.364664
Target:  5'- uGGCGgcGCGUGCUGGagcCCGAGCUG-GCCa -3'
miRNA:   3'- gUCGU--UGCGCGACC---GGUUCGACaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.