miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 38520 0.72 0.592339
Target:  5'- aGGC-GCGCGCUGGCUgcGCgc-GCCg -3'
miRNA:   3'- gUCGuUGCGCGACCGGuuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 38548 0.72 0.570581
Target:  5'- aCAGCGccgGCGCGC-GGCCAugcggcgGGUUGaGCCa -3'
miRNA:   3'- -GUCGU---UGCGCGaCCGGU-------UCGACaUGG- -5'
23767 3' -55.2 NC_005261.1 + 38685 0.78 0.275669
Target:  5'- cCAGUcuCGCGCUGGCCGGGCccaaGCCg -3'
miRNA:   3'- -GUCGuuGCGCGACCGGUUCGaca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 38861 0.67 0.838986
Target:  5'- aAGC-GCaCGCUGGCCAAGUac-ACCa -3'
miRNA:   3'- gUCGuUGcGCGACCGGUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 38955 0.69 0.778996
Target:  5'- -cGCGGCGCGCgGGCUgcgcagcaacaagAGccugcagauguuucuGCUGUGCCa -3'
miRNA:   3'- guCGUUGCGCGaCCGG-------------UU---------------CGACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 39333 0.67 0.847245
Target:  5'- -cGCGcCGcCGC-GGCCAAGCUGcGCg -3'
miRNA:   3'- guCGUuGC-GCGaCCGGUUCGACaUGg -5'
23767 3' -55.2 NC_005261.1 + 39797 0.69 0.766555
Target:  5'- gGGCGGCGCgGCcgccgGcGCCAGGCUcugGCCg -3'
miRNA:   3'- gUCGUUGCG-CGa----C-CGGUUCGAca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 39880 0.68 0.794911
Target:  5'- cCAGCAggccGCGCGCgcGGCUGugcAGCUGgcgcgcgcgGCCg -3'
miRNA:   3'- -GUCGU----UGCGCGa-CCGGU---UCGACa--------UGG- -5'
23767 3' -55.2 NC_005261.1 + 40047 0.66 0.898993
Target:  5'- cCAGCGugGCGacgGGCCcguGCUGgaGCa -3'
miRNA:   3'- -GUCGUugCGCga-CCGGuu-CGACa-UGg -5'
23767 3' -55.2 NC_005261.1 + 40499 0.68 0.821887
Target:  5'- gGGCGAUG-GUcaUGGCCAgcuucgAGCUGaUGCCg -3'
miRNA:   3'- gUCGUUGCgCG--ACCGGU------UCGAC-AUGG- -5'
23767 3' -55.2 NC_005261.1 + 41536 0.66 0.898993
Target:  5'- cCAGCccCG-GCUGGCCcguGGCgGUGCg -3'
miRNA:   3'- -GUCGuuGCgCGACCGGu--UCGaCAUGg -5'
23767 3' -55.2 NC_005261.1 + 42206 0.67 0.870771
Target:  5'- aCGGCGcCGCGCgGGCgccccgccgCGAGCUccGCCg -3'
miRNA:   3'- -GUCGUuGCGCGaCCG---------GUUCGAcaUGG- -5'
23767 3' -55.2 NC_005261.1 + 42354 0.67 0.870771
Target:  5'- -uGCugGGCGgGCUGGCCGcGCaaacguacugGUGCCg -3'
miRNA:   3'- guCG--UUGCgCGACCGGUuCGa---------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 42690 0.71 0.623634
Target:  5'- cCGGCAGcCGCGC-GGCCGccAGCU--GCCg -3'
miRNA:   3'- -GUCGUU-GCGCGaCCGGU--UCGAcaUGG- -5'
23767 3' -55.2 NC_005261.1 + 43468 0.66 0.89229
Target:  5'- gGGCGG-GUGCUGGCgGAGUgcgagGCCu -3'
miRNA:   3'- gUCGUUgCGCGACCGgUUCGaca--UGG- -5'
23767 3' -55.2 NC_005261.1 + 43498 0.66 0.905453
Target:  5'- gCGGCGGaccuccUGCGCUGcGCCAGcGCcGUgACCg -3'
miRNA:   3'- -GUCGUU------GCGCGAC-CGGUU-CGaCA-UGG- -5'
23767 3' -55.2 NC_005261.1 + 44226 0.7 0.696484
Target:  5'- gAGCGcGCGCuGCUGGCCGcccAGCgcgcgGCCg -3'
miRNA:   3'- gUCGU-UGCG-CGACCGGU---UCGaca--UGG- -5'
23767 3' -55.2 NC_005261.1 + 44264 0.69 0.766555
Target:  5'- -cGCGGCGCGCgggggGGCgGGGCcc-GCCg -3'
miRNA:   3'- guCGUUGCGCGa----CCGgUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 44293 0.66 0.905453
Target:  5'- cCAGCGGCGgGCcagGGCC--GCUGc-CCg -3'
miRNA:   3'- -GUCGUUGCgCGa--CCGGuuCGACauGG- -5'
23767 3' -55.2 NC_005261.1 + 44469 0.67 0.870771
Target:  5'- gAGCuGCuGCGCUGcuUCAAGCUGgcCCg -3'
miRNA:   3'- gUCGuUG-CGCGACc-GGUUCGACauGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.