miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 137523 0.66 0.88535
Target:  5'- uGGCuGCGCccaUGGCCAccaagguuGGCUugGUGCCa -3'
miRNA:   3'- gUCGuUGCGcg-ACCGGU--------UCGA--CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 136905 0.67 0.878175
Target:  5'- uGGCGugGUGUgGGCCGcGCg--GCCg -3'
miRNA:   3'- gUCGUugCGCGaCCGGUuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 136613 0.67 0.863144
Target:  5'- gAGCGGCGCGCgcgcGCCGagGGCggcgGgaagGCCu -3'
miRNA:   3'- gUCGUUGCGCGac--CGGU--UCGa---Ca---UGG- -5'
23767 3' -55.2 NC_005261.1 + 135810 0.69 0.766555
Target:  5'- gGGCGACGCGCcGuuCGAGgaGUACa -3'
miRNA:   3'- gUCGUUGCGCGaCcgGUUCgaCAUGg -5'
23767 3' -55.2 NC_005261.1 + 135762 0.67 0.838986
Target:  5'- -cGCggUGCGCUccGGCgcaGAGCgcGUGCCg -3'
miRNA:   3'- guCGuuGCGCGA--CCGg--UUCGa-CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 135483 0.74 0.462112
Target:  5'- gCGGCGagaaccugauggACGCGCUGGCCucAGCcgacgaGUGCCu -3'
miRNA:   3'- -GUCGU------------UGCGCGACCGGu-UCGa-----CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 135210 0.67 0.8553
Target:  5'- aGGCGGCGCagaggGCcacGGCCGAGCgcGUcGCCg -3'
miRNA:   3'- gUCGUUGCG-----CGa--CCGGUUCGa-CA-UGG- -5'
23767 3' -55.2 NC_005261.1 + 134865 0.67 0.870771
Target:  5'- aGGCGccCGCGCccccgcgGGCCccuGCUGUGCg -3'
miRNA:   3'- gUCGUu-GCGCGa------CCGGuu-CGACAUGg -5'
23767 3' -55.2 NC_005261.1 + 134373 0.66 0.898333
Target:  5'- gGGCGGCGcCGCUGGCgacggcgaGAGCgggaucaggaaggUGUGCg -3'
miRNA:   3'- gUCGUUGC-GCGACCGg-------UUCG-------------ACAUGg -5'
23767 3' -55.2 NC_005261.1 + 134316 0.72 0.592339
Target:  5'- -cGCcGCGCuggaGCUGGUCucgcuGCUGUACCg -3'
miRNA:   3'- guCGuUGCG----CGACCGGuu---CGACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 134202 0.66 0.905453
Target:  5'- gCGGCucgGCGCGCgGGUCGcGGCg--GCCg -3'
miRNA:   3'- -GUCGu--UGCGCGaCCGGU-UCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 133900 0.78 0.31048
Target:  5'- -cGCGGCGCGCugcUGGCCuggcuGCUGUACg -3'
miRNA:   3'- guCGUUGCGCG---ACCGGuu---CGACAUGg -5'
23767 3' -55.2 NC_005261.1 + 133607 0.69 0.756841
Target:  5'- aCGGCccaccuCGCGCUGGC---GCUGUggGCCg -3'
miRNA:   3'- -GUCGuu----GCGCGACCGguuCGACA--UGG- -5'
23767 3' -55.2 NC_005261.1 + 133209 0.68 0.821887
Target:  5'- -cGcCGACGcCGUcgaGGCCGAGCUGggGCCc -3'
miRNA:   3'- guC-GUUGC-GCGa--CCGGUUCGACa-UGG- -5'
23767 3' -55.2 NC_005261.1 + 132536 0.67 0.846428
Target:  5'- gAGCGcgcccucGCGCGCgagGGCgAGGCgcaGUACg -3'
miRNA:   3'- gUCGU-------UGCGCGa--CCGgUUCGa--CAUGg -5'
23767 3' -55.2 NC_005261.1 + 132365 0.66 0.89229
Target:  5'- -cGCGGCGCGCUcGCCGcgcucgcggcGCUGUuCCc -3'
miRNA:   3'- guCGUUGCGCGAcCGGUu---------CGACAuGG- -5'
23767 3' -55.2 NC_005261.1 + 131722 0.67 0.863144
Target:  5'- aGGCGGCGCGCUucGGUgGGuGCUGcACg -3'
miRNA:   3'- gUCGUUGCGCGA--CCGgUU-CGACaUGg -5'
23767 3' -55.2 NC_005261.1 + 131008 0.72 0.591299
Target:  5'- uGGCcACGCGCUucuacguguuccaGGCCGAGCgc-GCCg -3'
miRNA:   3'- gUCGuUGCGCGA-------------CCGGUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 130852 0.68 0.821887
Target:  5'- -uGCGcGCGCGCccGGCCGGGCgccgcgGCCu -3'
miRNA:   3'- guCGU-UGCGCGa-CCGGUUCGaca---UGG- -5'
23767 3' -55.2 NC_005261.1 + 130514 0.71 0.665414
Target:  5'- uGGCGcAgGCGCUGGCCgAAGCgc-GCCc -3'
miRNA:   3'- gUCGU-UgCGCGACCGG-UUCGacaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.