miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 128106 0.69 0.7856
Target:  5'- gAGCGGCGCgGCgcggGGUCGGGCcgaGUGCg -3'
miRNA:   3'- gUCGUUGCG-CGa---CCGGUUCGa--CAUGg -5'
23767 3' -55.2 NC_005261.1 + 127211 0.68 0.804068
Target:  5'- aCAGCGGCGCGC-GGCUuAAGCcGcGCg -3'
miRNA:   3'- -GUCGUUGCGCGaCCGG-UUCGaCaUGg -5'
23767 3' -55.2 NC_005261.1 + 126578 0.74 0.499828
Target:  5'- gCAGCAGCGCGC-GGCaguagcccaaaaaCAGGCccgcGUACCg -3'
miRNA:   3'- -GUCGUUGCGCGaCCG-------------GUUCGa---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 126455 0.69 0.766555
Target:  5'- cCAGCcgcgccAGCGCGCUcGCCucGCgguaGUACCg -3'
miRNA:   3'- -GUCG------UUGCGCGAcCGGuuCGa---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 125708 0.71 0.644545
Target:  5'- cCGGCGACGgccgcCGCgGGCUcGGCUGggGCCg -3'
miRNA:   3'- -GUCGUUGC-----GCGaCCGGuUCGACa-UGG- -5'
23767 3' -55.2 NC_005261.1 + 125339 0.7 0.696484
Target:  5'- -cGCAGCGCGCagGGCguccagCAGGCUccGCCg -3'
miRNA:   3'- guCGUUGCGCGa-CCG------GUUCGAcaUGG- -5'
23767 3' -55.2 NC_005261.1 + 124319 0.68 0.821887
Target:  5'- gCAGCAGCGCGUccGCCAaaaagAGCaGcGCCu -3'
miRNA:   3'- -GUCGUUGCGCGacCGGU-----UCGaCaUGG- -5'
23767 3' -55.2 NC_005261.1 + 123842 0.66 0.905453
Target:  5'- gCAGCGuCGCGCU-GCCuAGCggcaGCCg -3'
miRNA:   3'- -GUCGUuGCGCGAcCGGuUCGaca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 123510 0.71 0.675811
Target:  5'- gCGGCAGugcCGCGUccGCUAgcaAGCUGUACCg -3'
miRNA:   3'- -GUCGUU---GCGCGacCGGU---UCGACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 122632 0.66 0.898993
Target:  5'- aCGGCGA-GCGCgaGGCCcGGCgcgcGUACg -3'
miRNA:   3'- -GUCGUUgCGCGa-CCGGuUCGa---CAUGg -5'
23767 3' -55.2 NC_005261.1 + 122385 0.69 0.737077
Target:  5'- gCGGCcugGGgGCGCUuGCCAAGCUugcgcagcaccGUGCCg -3'
miRNA:   3'- -GUCG---UUgCGCGAcCGGUUCGA-----------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 122042 0.76 0.356536
Target:  5'- gCGGCAcuGCGCGCggaUGGCCGAGaucaUGUACg -3'
miRNA:   3'- -GUCGU--UGCGCG---ACCGGUUCg---ACAUGg -5'
23767 3' -55.2 NC_005261.1 + 121802 0.67 0.870771
Target:  5'- gGGCAggGgGCGCgUGGCUggGCUcugcggGCCg -3'
miRNA:   3'- gUCGU--UgCGCG-ACCGGuuCGAca----UGG- -5'
23767 3' -55.2 NC_005261.1 + 121234 0.67 0.8553
Target:  5'- -cGCAugGCGCcGGCCA-GCUccgACUc -3'
miRNA:   3'- guCGUugCGCGaCCGGUuCGAca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 119046 0.75 0.44336
Target:  5'- aCGGUAACGCGCccgcGGCCGcGCgUGUGCUu -3'
miRNA:   3'- -GUCGUUGCGCGa---CCGGUuCG-ACAUGG- -5'
23767 3' -55.2 NC_005261.1 + 118935 0.7 0.686171
Target:  5'- gCGGCGccGCGCgGCUGGCCGcGGCgcacgugGCCa -3'
miRNA:   3'- -GUCGU--UGCG-CGACCGGU-UCGaca----UGG- -5'
23767 3' -55.2 NC_005261.1 + 118858 0.69 0.766555
Target:  5'- gGGCGGCGCGCccgcGGCCcuGGCcucgGCCa -3'
miRNA:   3'- gUCGUUGCGCGa---CCGGu-UCGaca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 118735 0.73 0.520695
Target:  5'- aCGGCGuCGCGCUcGCCGAGCaccucUGUugCg -3'
miRNA:   3'- -GUCGUuGCGCGAcCGGUUCG-----ACAugG- -5'
23767 3' -55.2 NC_005261.1 + 118679 0.66 0.905453
Target:  5'- gGGCGGCggGCGCUGGCgCAcgcgcGGCgugGU-CCu -3'
miRNA:   3'- gUCGUUG--CGCGACCG-GU-----UCGa--CAuGG- -5'
23767 3' -55.2 NC_005261.1 + 118581 0.69 0.781834
Target:  5'- gCGGCGGCGCGCgccGCCGccgcggagcucgcGCUGUcgGCCg -3'
miRNA:   3'- -GUCGUUGCGCGac-CGGUu------------CGACA--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.