miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 118371 0.67 0.838986
Target:  5'- gGGCGcugggGCGCGC-GGCCcgaggcGCUGgcgGCCg -3'
miRNA:   3'- gUCGU-----UGCGCGaCCGGuu----CGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 118320 0.7 0.696484
Target:  5'- -cGCAccGCGCuGCUGGCCAugaccugcgGGCUGcuccucgGCCu -3'
miRNA:   3'- guCGU--UGCG-CGACCGGU---------UCGACa------UGG- -5'
23767 3' -55.2 NC_005261.1 + 118145 0.67 0.863144
Target:  5'- cCGGCucGCGCagacGCUGGCCGucgcggcggGGCU-UGCCg -3'
miRNA:   3'- -GUCGu-UGCG----CGACCGGU---------UCGAcAUGG- -5'
23767 3' -55.2 NC_005261.1 + 118002 0.66 0.897007
Target:  5'- aCGGCGGCgGCGCUGGac--GCUGUcggacgcacgcgggGCCc -3'
miRNA:   3'- -GUCGUUG-CGCGACCgguuCGACA--------------UGG- -5'
23767 3' -55.2 NC_005261.1 + 117911 0.67 0.838986
Target:  5'- gAGCGGCuGCGCgggaacgaaGGCCG-GCUGcgGCCc -3'
miRNA:   3'- gUCGUUG-CGCGa--------CCGGUuCGACa-UGG- -5'
23767 3' -55.2 NC_005261.1 + 117711 0.7 0.727047
Target:  5'- aGGcCGGCGCGCgGGCCcgcAAGCg--GCCg -3'
miRNA:   3'- gUC-GUUGCGCGaCCGG---UUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 117477 0.7 0.706741
Target:  5'- gCGGCGACGCGCUG-CUgcGCUucUACCu -3'
miRNA:   3'- -GUCGUUGCGCGACcGGuuCGAc-AUGG- -5'
23767 3' -55.2 NC_005261.1 + 116158 0.66 0.909212
Target:  5'- aAGCAGCGCGCggucgcGGCCGcguccccgacgccGCUGggcgcgucGCCg -3'
miRNA:   3'- gUCGUUGCGCGa-----CCGGUu------------CGACa-------UGG- -5'
23767 3' -55.2 NC_005261.1 + 115835 0.69 0.756841
Target:  5'- cCAGCuugGGCGCGUUGGCCc-GCgcgGCCc -3'
miRNA:   3'- -GUCG---UUGCGCGACCGGuuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 115301 0.66 0.901606
Target:  5'- -cGCAACGCGUcGGCgcacgucugcgcgauCGGGggGUACCg -3'
miRNA:   3'- guCGUUGCGCGaCCG---------------GUUCgaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 114349 0.74 0.462112
Target:  5'- gAGCGGCGCGUggccgcGGCCGAGUcGgugGCCg -3'
miRNA:   3'- gUCGUUGCGCGa-----CCGGUUCGaCa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 114059 0.66 0.89229
Target:  5'- aGGaCGugGCGCggcucagcgGcGCCGAGCUGgaguuuUACCg -3'
miRNA:   3'- gUC-GUugCGCGa--------C-CGGUUCGAC------AUGG- -5'
23767 3' -55.2 NC_005261.1 + 113611 0.69 0.7856
Target:  5'- gGGCAcC-CGCUGGCCAAGUUcaagacgGCCu -3'
miRNA:   3'- gUCGUuGcGCGACCGGUUCGAca-----UGG- -5'
23767 3' -55.2 NC_005261.1 + 113515 0.7 0.716932
Target:  5'- aAGCAcuuuACGCGCgaGGCCAgccGGCUcgggGCCg -3'
miRNA:   3'- gUCGU----UGCGCGa-CCGGU---UCGAca--UGG- -5'
23767 3' -55.2 NC_005261.1 + 113329 0.69 0.737077
Target:  5'- -cGCGAgaagguCGCGC-GGCaCGGGCUGUACa -3'
miRNA:   3'- guCGUU------GCGCGaCCG-GUUCGACAUGg -5'
23767 3' -55.2 NC_005261.1 + 113039 0.66 0.89229
Target:  5'- gGGCcGCGCGC-GGCguGGCgc-GCCa -3'
miRNA:   3'- gUCGuUGCGCGaCCGguUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 112998 0.67 0.870771
Target:  5'- -cGuCAACGCcaugauGCUGGgCGGGCaGUACCc -3'
miRNA:   3'- guC-GUUGCG------CGACCgGUUCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 112935 0.69 0.74305
Target:  5'- gGGCGGCGCGCUcgccuucgacuucGCCGcGCUGU-CCa -3'
miRNA:   3'- gUCGUUGCGCGAc------------CGGUuCGACAuGG- -5'
23767 3' -55.2 NC_005261.1 + 112670 0.66 0.88535
Target:  5'- gAGCGGCuggaGCGCgaggGGCUggGCgucgaggccGUGCCc -3'
miRNA:   3'- gUCGUUG----CGCGa---CCGGuuCGa--------CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 112454 0.66 0.911669
Target:  5'- -uGCGACGUGCgGGCCGuGCUaaACa -3'
miRNA:   3'- guCGUUGCGCGaCCGGUuCGAcaUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.