Results 1 - 20 of 294 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23767 | 3' | -55.2 | NC_005261.1 | + | 51490 | 0.66 | 0.911669 |
Target: 5'- cCGGCGcCGCGCcccugaugcucGGCCAGauGCUGggcGCCg -3' miRNA: 3'- -GUCGUuGCGCGa----------CCGGUU--CGACa--UGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 88826 | 0.76 | 0.3813 |
Target: 5'- gCGGCGGCGCGCgccGGCCcGGCgucgGcUACCu -3' miRNA: 3'- -GUCGUUGCGCGa--CCGGuUCGa---C-AUGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 99470 | 0.76 | 0.3813 |
Target: 5'- -cGCGGCgGCGCUGGCC--GCUGcgGCCa -3' miRNA: 3'- guCGUUG-CGCGACCGGuuCGACa-UGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 112176 | 0.75 | 0.407186 |
Target: 5'- cCGGCcGCGCGCggggcucgcUGGCC-AGCUGcUACCu -3' miRNA: 3'- -GUCGuUGCGCG---------ACCGGuUCGAC-AUGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 31823 | 0.75 | 0.434146 |
Target: 5'- gAGCGgcGCGCGCUGGCgCGcGCcGUGCUg -3' miRNA: 3'- gUCGU--UGCGCGACCG-GUuCGaCAUGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 119046 | 0.75 | 0.44336 |
Target: 5'- aCGGUAACGCGCccgcGGCCGcGCgUGUGCUu -3' miRNA: 3'- -GUCGUUGCGCGa---CCGGUuCG-ACAUGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 29827 | 0.74 | 0.452683 |
Target: 5'- -cGCGcCGCGCUcGCCGAGCUGcgcGCCg -3' miRNA: 3'- guCGUuGCGCGAcCGGUUCGACa--UGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 60095 | 0.74 | 0.462112 |
Target: 5'- gCAGCAGCaCGCUGGCCA-GCgc-GCCc -3' miRNA: 3'- -GUCGUUGcGCGACCGGUuCGacaUGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 99717 | 0.74 | 0.462112 |
Target: 5'- aCGGUcGCGCGCgUGGCCGcgucaGGCgcGUGCCg -3' miRNA: 3'- -GUCGuUGCGCG-ACCGGU-----UCGa-CAUGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 54322 | 0.76 | 0.3813 |
Target: 5'- cCAGCAAgGCG-UGGCCGAGCgcGUACa -3' miRNA: 3'- -GUCGUUgCGCgACCGGUUCGa-CAUGg -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 37877 | 0.76 | 0.364664 |
Target: 5'- uGGCGgcGCGUGCUGGagcCCGAGCUG-GCCa -3' miRNA: 3'- gUCGU--UGCGCGACC---GGUUCGACaUGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 122042 | 0.76 | 0.356536 |
Target: 5'- gCGGCAcuGCGCGCggaUGGCCGAGaucaUGUACg -3' miRNA: 3'- -GUCGU--UGCGCG---ACCGGUUCg---ACAUGg -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 94182 | 0.81 | 0.19477 |
Target: 5'- cCAGCGugGCGCggugcgcGGCCAGGaaGUGCCg -3' miRNA: 3'- -GUCGUugCGCGa------CCGGUUCgaCAUGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 4407 | 0.8 | 0.215503 |
Target: 5'- gCGGCGGCGCGCUgccgGGCCAGGCcucGCCg -3' miRNA: 3'- -GUCGUUGCGCGA----CCGGUUCGacaUGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 37250 | 0.79 | 0.250122 |
Target: 5'- uGGaCAGCGCGgagaccaucCUGGCCGAGCcGUGCCg -3' miRNA: 3'- gUC-GUUGCGC---------GACCGGUUCGaCAUGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 38685 | 0.78 | 0.275669 |
Target: 5'- cCAGUcuCGCGCUGGCCGGGCccaaGCCg -3' miRNA: 3'- -GUCGuuGCGCGACCGGUUCGaca-UGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 88215 | 0.78 | 0.282373 |
Target: 5'- cCGGCaAGCGCGC-GGCCGAGUcGUACUa -3' miRNA: 3'- -GUCG-UUGCGCGaCCGGUUCGaCAUGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 89943 | 0.78 | 0.303258 |
Target: 5'- gCGGUGGCGCgGCUGGCCGGGaucacaGUGCCg -3' miRNA: 3'- -GUCGUUGCG-CGACCGGUUCga----CAUGG- -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 133900 | 0.78 | 0.31048 |
Target: 5'- -cGCGGCGCGCugcUGGCCuggcuGCUGUACg -3' miRNA: 3'- guCGUUGCGCG---ACCGGuu---CGACAUGg -5' |
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23767 | 3' | -55.2 | NC_005261.1 | + | 65548 | 0.77 | 0.340665 |
Target: 5'- gCAGCAGCGCGU--GCCAGGCguccaugaaGUGCCg -3' miRNA: 3'- -GUCGUUGCGCGacCGGUUCGa--------CAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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