miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 3' -55.2 NC_005261.1 + 88215 0.78 0.282373
Target:  5'- cCGGCaAGCGCGC-GGCCGAGUcGUACUa -3'
miRNA:   3'- -GUCG-UUGCGCGaCCGGUUCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 38685 0.78 0.275669
Target:  5'- cCAGUcuCGCGCUGGCCGGGCccaaGCCg -3'
miRNA:   3'- -GUCGuuGCGCGACCGGUUCGaca-UGG- -5'
23767 3' -55.2 NC_005261.1 + 37250 0.79 0.250122
Target:  5'- uGGaCAGCGCGgagaccaucCUGGCCGAGCcGUGCCg -3'
miRNA:   3'- gUC-GUUGCGC---------GACCGGUUCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 4407 0.8 0.215503
Target:  5'- gCGGCGGCGCGCUgccgGGCCAGGCcucGCCg -3'
miRNA:   3'- -GUCGUUGCGCGA----CCGGUUCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 94182 0.81 0.19477
Target:  5'- cCAGCGugGCGCggugcgcGGCCAGGaaGUGCCg -3'
miRNA:   3'- -GUCGUugCGCGa------CCGGUUCgaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 112176 0.75 0.407186
Target:  5'- cCGGCcGCGCGCggggcucgcUGGCC-AGCUGcUACCu -3'
miRNA:   3'- -GUCGuUGCGCG---------ACCGGuUCGAC-AUGG- -5'
23767 3' -55.2 NC_005261.1 + 31823 0.75 0.434146
Target:  5'- gAGCGgcGCGCGCUGGCgCGcGCcGUGCUg -3'
miRNA:   3'- gUCGU--UGCGCGACCG-GUuCGaCAUGG- -5'
23767 3' -55.2 NC_005261.1 + 60847 0.74 0.500813
Target:  5'- gCGGCGaggucGCGCGCcgGGCCGAGCccGcGCCg -3'
miRNA:   3'- -GUCGU-----UGCGCGa-CCGGUUCGa-CaUGG- -5'
23767 3' -55.2 NC_005261.1 + 126578 0.74 0.499828
Target:  5'- gCAGCAGCGCGC-GGCaguagcccaaaaaCAGGCccgcGUACCg -3'
miRNA:   3'- -GUCGUUGCGCGaCCG-------------GUUCGa---CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 100745 0.74 0.490999
Target:  5'- gCGGCGGCGCGC-GGCaCGAGCUugaaGUagGCCu -3'
miRNA:   3'- -GUCGUUGCGCGaCCG-GUUCGA----CA--UGG- -5'
23767 3' -55.2 NC_005261.1 + 32188 0.74 0.477411
Target:  5'- gGGCGgcGCGCGCUGGagcuggcgcccgaCGAGCUGccgGCCg -3'
miRNA:   3'- gUCGU--UGCGCGACCg------------GUUCGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 49176 0.74 0.471644
Target:  5'- aCGGCGGgGUGCUcGGCCAGGCccucgGCCg -3'
miRNA:   3'- -GUCGUUgCGCGA-CCGGUUCGaca--UGG- -5'
23767 3' -55.2 NC_005261.1 + 28594 0.74 0.471644
Target:  5'- cCGGCGggccgcccGCGCcgaGCUGGCgGAGCUGUGgCg -3'
miRNA:   3'- -GUCGU--------UGCG---CGACCGgUUCGACAUgG- -5'
23767 3' -55.2 NC_005261.1 + 29905 0.74 0.471644
Target:  5'- gCGGCAGCGCGCgagcGGCUgcgcGAGCUGgcggACg -3'
miRNA:   3'- -GUCGUUGCGCGa---CCGG----UUCGACa---UGg -5'
23767 3' -55.2 NC_005261.1 + 135483 0.74 0.462112
Target:  5'- gCGGCGagaaccugauggACGCGCUGGCCucAGCcgacgaGUGCCu -3'
miRNA:   3'- -GUCGU------------UGCGCGACCGGu-UCGa-----CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 114349 0.74 0.462112
Target:  5'- gAGCGGCGCGUggccgcGGCCGAGUcGgugGCCg -3'
miRNA:   3'- gUCGUUGCGCGa-----CCGGUUCGaCa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 99717 0.74 0.462112
Target:  5'- aCGGUcGCGCGCgUGGCCGcgucaGGCgcGUGCCg -3'
miRNA:   3'- -GUCGuUGCGCG-ACCGGU-----UCGa-CAUGG- -5'
23767 3' -55.2 NC_005261.1 + 60095 0.74 0.462112
Target:  5'- gCAGCAGCaCGCUGGCCA-GCgc-GCCc -3'
miRNA:   3'- -GUCGUUGcGCGACCGGUuCGacaUGG- -5'
23767 3' -55.2 NC_005261.1 + 29827 0.74 0.452683
Target:  5'- -cGCGcCGCGCUcGCCGAGCUGcgcGCCg -3'
miRNA:   3'- guCGUuGCGCGAcCGGUUCGACa--UGG- -5'
23767 3' -55.2 NC_005261.1 + 119046 0.75 0.44336
Target:  5'- aCGGUAACGCGCccgcGGCCGcGCgUGUGCUu -3'
miRNA:   3'- -GUCGUUGCGCGa---CCGGUuCG-ACAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.