miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23767 5' -57.6 NC_005261.1 + 106123 0.66 0.84725
Target:  5'- -cGGCGCGCgcgCGc-CGGCaACGC-CGGa -3'
miRNA:   3'- gaCCGUGCGa--GCuuGCCG-UGCGaGCU- -5'
23767 5' -57.6 NC_005261.1 + 132106 0.66 0.84725
Target:  5'- -cGGCcgcgacGCGCUCgugGAGCGGgACGCgCGGc -3'
miRNA:   3'- gaCCG------UGCGAG---CUUGCCgUGCGaGCU- -5'
23767 5' -57.6 NC_005261.1 + 23945 0.66 0.84725
Target:  5'- -cGGCGgGUUCGGGgucguCGGCACGCg--- -3'
miRNA:   3'- gaCCGUgCGAGCUU-----GCCGUGCGagcu -5'
23767 5' -57.6 NC_005261.1 + 101238 0.66 0.84725
Target:  5'- gUGGCGCcucaGCUCGcGCaGCGCG-UCGAu -3'
miRNA:   3'- gACCGUG----CGAGCuUGcCGUGCgAGCU- -5'
23767 5' -57.6 NC_005261.1 + 59087 0.66 0.846457
Target:  5'- -gGGUgcgccgcgcccucGCGCUCGca-GGCGCGCgCGAg -3'
miRNA:   3'- gaCCG-------------UGCGAGCuugCCGUGCGaGCU- -5'
23767 5' -57.6 NC_005261.1 + 74245 0.66 0.846457
Target:  5'- -gGGCGCGC-CGAguacgucccauucGCGcGCGCGCguccgCGGc -3'
miRNA:   3'- gaCCGUGCGaGCU-------------UGC-CGUGCGa----GCU- -5'
23767 5' -57.6 NC_005261.1 + 82973 0.66 0.839231
Target:  5'- gUGGUGCGCgUCGAgcacggagGCGGC-CGcCUCGc -3'
miRNA:   3'- gACCGUGCG-AGCU--------UGCCGuGC-GAGCu -5'
23767 5' -57.6 NC_005261.1 + 16060 0.66 0.839231
Target:  5'- -gGGCccGCGC-CGAGcCGGCGCGUguagaCGAa -3'
miRNA:   3'- gaCCG--UGCGaGCUU-GCCGUGCGa----GCU- -5'
23767 5' -57.6 NC_005261.1 + 11951 0.66 0.839231
Target:  5'- -cGGCG-GCUCGccCGGCGCGCg--- -3'
miRNA:   3'- gaCCGUgCGAGCuuGCCGUGCGagcu -5'
23767 5' -57.6 NC_005261.1 + 130340 0.66 0.839231
Target:  5'- -cGGcCGCGCUCGG--GGaCGCGCUgCGGg -3'
miRNA:   3'- gaCC-GUGCGAGCUugCC-GUGCGA-GCU- -5'
23767 5' -57.6 NC_005261.1 + 117983 0.66 0.838419
Target:  5'- -gGGCGCGCacacCGGccugacgGCGGCgGCGCUgGAc -3'
miRNA:   3'- gaCCGUGCGa---GCU-------UGCCG-UGCGAgCU- -5'
23767 5' -57.6 NC_005261.1 + 115165 0.66 0.831027
Target:  5'- -gGGCGCcuccuGCgCGAugGGCACGCg--- -3'
miRNA:   3'- gaCCGUG-----CGaGCUugCCGUGCGagcu -5'
23767 5' -57.6 NC_005261.1 + 77089 0.66 0.831027
Target:  5'- gCUGGCGCGgaCGcugcucucGACGGCcgugaacaacAUGCUCGu -3'
miRNA:   3'- -GACCGUGCgaGC--------UUGCCG----------UGCGAGCu -5'
23767 5' -57.6 NC_005261.1 + 38798 0.66 0.831027
Target:  5'- aUGGUcuccuccaucgACgaGCUCGGGCGGCGCcaGCUCa- -3'
miRNA:   3'- gACCG-----------UG--CGAGCUUGCCGUG--CGAGcu -5'
23767 5' -57.6 NC_005261.1 + 92998 0.66 0.831027
Target:  5'- gCUGGUACGuCUUGAAgGcGUACGCgagCGc -3'
miRNA:   3'- -GACCGUGC-GAGCUUgC-CGUGCGa--GCu -5'
23767 5' -57.6 NC_005261.1 + 64096 0.66 0.831027
Target:  5'- uUGGCGCccacaaagugcgGCaCGGGCGGCACGUgccgcgCGGc -3'
miRNA:   3'- gACCGUG------------CGaGCUUGCCGUGCGa-----GCU- -5'
23767 5' -57.6 NC_005261.1 + 54125 0.66 0.831027
Target:  5'- --cGCGgGCUCGucccACGGCACGC-CGc -3'
miRNA:   3'- gacCGUgCGAGCu---UGCCGUGCGaGCu -5'
23767 5' -57.6 NC_005261.1 + 108891 0.66 0.831027
Target:  5'- -cGGcCGCGCUgcccgccggCGAGCGGgGCGCggggUCGGg -3'
miRNA:   3'- gaCC-GUGCGA---------GCUUGCCgUGCG----AGCU- -5'
23767 5' -57.6 NC_005261.1 + 99542 0.66 0.831027
Target:  5'- -gGGCGCGUcCaGGCGGCGCGC-Ca- -3'
miRNA:   3'- gaCCGUGCGaGcUUGCCGUGCGaGcu -5'
23767 5' -57.6 NC_005261.1 + 52986 0.66 0.826018
Target:  5'- -cGGCAgGCggGGGCGGCGCccaggcgucggcgcaGCUCGc -3'
miRNA:   3'- gaCCGUgCGagCUUGCCGUG---------------CGAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.