Results 1 - 20 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23767 | 5' | -57.6 | NC_005261.1 | + | 106123 | 0.66 | 0.84725 |
Target: 5'- -cGGCGCGCgcgCGc-CGGCaACGC-CGGa -3' miRNA: 3'- gaCCGUGCGa--GCuuGCCG-UGCGaGCU- -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 132106 | 0.66 | 0.84725 |
Target: 5'- -cGGCcgcgacGCGCUCgugGAGCGGgACGCgCGGc -3' miRNA: 3'- gaCCG------UGCGAG---CUUGCCgUGCGaGCU- -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 23945 | 0.66 | 0.84725 |
Target: 5'- -cGGCGgGUUCGGGgucguCGGCACGCg--- -3' miRNA: 3'- gaCCGUgCGAGCUU-----GCCGUGCGagcu -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 101238 | 0.66 | 0.84725 |
Target: 5'- gUGGCGCcucaGCUCGcGCaGCGCG-UCGAu -3' miRNA: 3'- gACCGUG----CGAGCuUGcCGUGCgAGCU- -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 59087 | 0.66 | 0.846457 |
Target: 5'- -gGGUgcgccgcgcccucGCGCUCGca-GGCGCGCgCGAg -3' miRNA: 3'- gaCCG-------------UGCGAGCuugCCGUGCGaGCU- -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 74245 | 0.66 | 0.846457 |
Target: 5'- -gGGCGCGC-CGAguacgucccauucGCGcGCGCGCguccgCGGc -3' miRNA: 3'- gaCCGUGCGaGCU-------------UGC-CGUGCGa----GCU- -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 82973 | 0.66 | 0.839231 |
Target: 5'- gUGGUGCGCgUCGAgcacggagGCGGC-CGcCUCGc -3' miRNA: 3'- gACCGUGCG-AGCU--------UGCCGuGC-GAGCu -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 16060 | 0.66 | 0.839231 |
Target: 5'- -gGGCccGCGC-CGAGcCGGCGCGUguagaCGAa -3' miRNA: 3'- gaCCG--UGCGaGCUU-GCCGUGCGa----GCU- -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 11951 | 0.66 | 0.839231 |
Target: 5'- -cGGCG-GCUCGccCGGCGCGCg--- -3' miRNA: 3'- gaCCGUgCGAGCuuGCCGUGCGagcu -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 130340 | 0.66 | 0.839231 |
Target: 5'- -cGGcCGCGCUCGG--GGaCGCGCUgCGGg -3' miRNA: 3'- gaCC-GUGCGAGCUugCC-GUGCGA-GCU- -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 117983 | 0.66 | 0.838419 |
Target: 5'- -gGGCGCGCacacCGGccugacgGCGGCgGCGCUgGAc -3' miRNA: 3'- gaCCGUGCGa---GCU-------UGCCG-UGCGAgCU- -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 115165 | 0.66 | 0.831027 |
Target: 5'- -gGGCGCcuccuGCgCGAugGGCACGCg--- -3' miRNA: 3'- gaCCGUG-----CGaGCUugCCGUGCGagcu -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 77089 | 0.66 | 0.831027 |
Target: 5'- gCUGGCGCGgaCGcugcucucGACGGCcgugaacaacAUGCUCGu -3' miRNA: 3'- -GACCGUGCgaGC--------UUGCCG----------UGCGAGCu -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 38798 | 0.66 | 0.831027 |
Target: 5'- aUGGUcuccuccaucgACgaGCUCGGGCGGCGCcaGCUCa- -3' miRNA: 3'- gACCG-----------UG--CGAGCUUGCCGUG--CGAGcu -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 92998 | 0.66 | 0.831027 |
Target: 5'- gCUGGUACGuCUUGAAgGcGUACGCgagCGc -3' miRNA: 3'- -GACCGUGC-GAGCUUgC-CGUGCGa--GCu -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 64096 | 0.66 | 0.831027 |
Target: 5'- uUGGCGCccacaaagugcgGCaCGGGCGGCACGUgccgcgCGGc -3' miRNA: 3'- gACCGUG------------CGaGCUUGCCGUGCGa-----GCU- -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 54125 | 0.66 | 0.831027 |
Target: 5'- --cGCGgGCUCGucccACGGCACGC-CGc -3' miRNA: 3'- gacCGUgCGAGCu---UGCCGUGCGaGCu -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 108891 | 0.66 | 0.831027 |
Target: 5'- -cGGcCGCGCUgcccgccggCGAGCGGgGCGCggggUCGGg -3' miRNA: 3'- gaCC-GUGCGA---------GCUUGCCgUGCG----AGCU- -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 99542 | 0.66 | 0.831027 |
Target: 5'- -gGGCGCGUcCaGGCGGCGCGC-Ca- -3' miRNA: 3'- gaCCGUGCGaGcUUGCCGUGCGaGcu -5' |
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23767 | 5' | -57.6 | NC_005261.1 | + | 52986 | 0.66 | 0.826018 |
Target: 5'- -cGGCAgGCggGGGCGGCGCccaggcgucggcgcaGCUCGc -3' miRNA: 3'- gaCCGUgCGagCUUGCCGUG---------------CGAGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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