miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23768 3' -47.1 NC_005261.1 + 30383 0.71 0.986147
Target:  5'- cGCCGCGGCgCGGGUggagGugGAGGACa -3'
miRNA:   3'- cUGGUGUCG-GCUCAaa--CuuUUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 30424 0.68 0.998181
Target:  5'- cACCGCGGgCGGaccugGAGGAGGACGg -3'
miRNA:   3'- cUGGUGUCgGCUcaaa-CUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 30560 0.7 0.987832
Target:  5'- cGCCGCcGCCGGGgccucgGAcgGGGACGg -3'
miRNA:   3'- cUGGUGuCGGCUCaaa---CUuuUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 30835 0.66 0.99974
Target:  5'- --aCGgGGCCGAGgagGAGGAGGAgGa -3'
miRNA:   3'- cugGUgUCGGCUCaaaCUUUUCUUgC- -5'
23768 3' -47.1 NC_005261.1 + 31558 0.68 0.99781
Target:  5'- cGCCugGGCCGGGUccUGGAc-GGGCGc -3'
miRNA:   3'- cUGGugUCGGCUCAa-ACUUuuCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 33006 0.66 0.999844
Target:  5'- cGACCGgGGaaGGGgg-GAGGGGGGCGc -3'
miRNA:   3'- -CUGGUgUCggCUCaaaCUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 38622 0.69 0.996108
Target:  5'- uGGCCGCGGCCGAgcccgccgccgacgGUgacggUGAAAGcGGCGg -3'
miRNA:   3'- -CUGGUGUCGGCU--------------CAa----ACUUUUcUUGC- -5'
23768 3' -47.1 NC_005261.1 + 44847 0.7 0.987832
Target:  5'- aGCCGCAGCCGcAGccgcGAGgAAGAGCGc -3'
miRNA:   3'- cUGGUGUCGGC-UCaaa-CUU-UUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 54727 0.71 0.986147
Target:  5'- cGACCgcGCGGCCGAGUccGAc--GAACGc -3'
miRNA:   3'- -CUGG--UGUCGGCUCAaaCUuuuCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 56159 0.66 0.999844
Target:  5'- uGGCgGCAGCggCGGGgcccgcGggGAGGACGa -3'
miRNA:   3'- -CUGgUGUCG--GCUCaaa---CuuUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 58288 0.68 0.998497
Target:  5'- gGGCCgGCGcGCCGGGgggcgcggGGAGGGGGCGg -3'
miRNA:   3'- -CUGG-UGU-CGGCUCaaa-----CUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 72571 0.67 0.999473
Target:  5'- cGCCGgGcGCCGAGUcccAAGAGGGCGa -3'
miRNA:   3'- cUGGUgU-CGGCUCAaacUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 74341 0.69 0.995635
Target:  5'- aGACCGCAGgCGcGgcggcGGAAGGGGCGg -3'
miRNA:   3'- -CUGGUGUCgGCuCaaa--CUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 74414 0.73 0.954087
Target:  5'- cGGCCGCGGgCGGGagggccGAGGAGAGCGc -3'
miRNA:   3'- -CUGGUGUCgGCUCaaa---CUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 74973 0.67 0.998972
Target:  5'- aGGCCGCGcgcccgcGCCGGGUgcaGAucgccAAGAACGa -3'
miRNA:   3'- -CUGGUGU-------CGGCUCAaa-CUu----UUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 77218 0.7 0.993046
Target:  5'- -cCCGCuGGCCGGGg--GGGAGGAGCc -3'
miRNA:   3'- cuGGUG-UCGGCUCaaaCUUUUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 77242 0.7 0.989355
Target:  5'- aGAgCGCAGCCGGGcuc-AAAAGGGCGc -3'
miRNA:   3'- -CUgGUGUCGGCUCaaacUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 77761 0.69 0.995635
Target:  5'- --aCGCAGCCGGGgc-GGcgGGGACGa -3'
miRNA:   3'- cugGUGUCGGCUCaaaCUuuUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 83762 0.67 0.999297
Target:  5'- cGCCACGGCCGGGUcgcagcgcccGAGCa -3'
miRNA:   3'- cUGGUGUCGGCUCAaacuuuu---CUUGc -5'
23768 3' -47.1 NC_005261.1 + 90127 0.66 0.999844
Target:  5'- -cCCGCGG-CGAGggcgagGAGGGGGGCGa -3'
miRNA:   3'- cuGGUGUCgGCUCaaa---CUUUUCUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.