miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23768 3' -47.1 NC_005261.1 + 114359 0.78 0.777882
Target:  5'- uGGCCGCGGCCGAGUcgguggccGAGAAGuACGu -3'
miRNA:   3'- -CUGGUGUCGGCUCAaa------CUUUUCuUGC- -5'
23768 3' -47.1 NC_005261.1 + 96479 0.76 0.883868
Target:  5'- -uCCGCGGCUGGGggUGAugGGAGCa -3'
miRNA:   3'- cuGGUGUCGGCUCaaACUuuUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 1181 0.73 0.949731
Target:  5'- cGCCGCGGCCGGGgccgGGGccGGGCGc -3'
miRNA:   3'- cUGGUGUCGGCUCaaa-CUUuuCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 23732 0.73 0.954087
Target:  5'- uGGCCGC-GCCGAGgcgcguccGGGAGGGGCGg -3'
miRNA:   3'- -CUGGUGuCGGCUCaaa-----CUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 74414 0.73 0.954087
Target:  5'- cGGCCGCGGgCGGGagggccGAGGAGAGCGc -3'
miRNA:   3'- -CUGGUGUCgGCUCaaa---CUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 112650 0.73 0.954087
Target:  5'- cGGCCuucGCAGCCGAGUacGAGcggcuGGAGCGc -3'
miRNA:   3'- -CUGG---UGUCGGCUCAaaCUUu----UCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 121783 0.72 0.965604
Target:  5'- uGGCCGCGGCCGgcGGgcUGGgcAGGGGGCGc -3'
miRNA:   3'- -CUGGUGUCGGC--UCaaACU--UUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 54727 0.71 0.986147
Target:  5'- cGACCgcGCGGCCGAGUccGAc--GAACGc -3'
miRNA:   3'- -CUGG--UGUCGGCUCAaaCUuuuCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 30383 0.71 0.986147
Target:  5'- cGCCGCGGCgCGGGUggagGugGAGGACa -3'
miRNA:   3'- cUGGUGUCG-GCUCAaa--CuuUUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 22551 0.71 0.986147
Target:  5'- gGGCCGCGGCgagauaCGGGgaggggagGggGAGAGCGg -3'
miRNA:   3'- -CUGGUGUCG------GCUCaaa-----CuuUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 25460 0.71 0.986147
Target:  5'- aGACC-CAGCCGGGgcuugagUGGGAAGGGg- -3'
miRNA:   3'- -CUGGuGUCGGCUCaa-----ACUUUUCUUgc -5'
23768 3' -47.1 NC_005261.1 + 30560 0.7 0.987832
Target:  5'- cGCCGCcGCCGGGgccucgGAcgGGGACGg -3'
miRNA:   3'- cUGGUGuCGGCUCaaa---CUuuUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 44847 0.7 0.987832
Target:  5'- aGCCGCAGCCGcAGccgcGAGgAAGAGCGc -3'
miRNA:   3'- cUGGUGUCGGC-UCaaa-CUU-UUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 77242 0.7 0.989355
Target:  5'- aGAgCGCAGCCGGGcuc-AAAAGGGCGc -3'
miRNA:   3'- -CUgGUGUCGGCUCaaacUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 77218 0.7 0.993046
Target:  5'- -cCCGCuGGCCGGGg--GGGAGGAGCc -3'
miRNA:   3'- cuGGUG-UCGGCUCaaaCUUUUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 128886 0.69 0.994018
Target:  5'- aGGCgGgGGCCGGGUggGAGgcGGGCGu -3'
miRNA:   3'- -CUGgUgUCGGCUCAaaCUUuuCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 137112 0.69 0.994878
Target:  5'- gGACCcgcGCGGCgGcGUUuugUGGAAGGAGCGa -3'
miRNA:   3'- -CUGG---UGUCGgCuCAA---ACUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 74341 0.69 0.995635
Target:  5'- aGACCGCAGgCGcGgcggcGGAAGGGGCGg -3'
miRNA:   3'- -CUGGUGUCgGCuCaaa--CUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 135588 0.69 0.995635
Target:  5'- uGGCCACGGCCGGcgccGUgcu-GGAGAACc -3'
miRNA:   3'- -CUGGUGUCGGCU----CAaacuUUUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 77761 0.69 0.995635
Target:  5'- --aCGCAGCCGGGgc-GGcgGGGACGa -3'
miRNA:   3'- cugGUGUCGGCUCaaaCUuuUCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.