miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23768 3' -47.1 NC_005261.1 + 83762 0.67 0.999297
Target:  5'- cGCCACGGCCGGGUcgcagcgcccGAGCa -3'
miRNA:   3'- cUGGUGUCGGCUCAaacuuuu---CUUGc -5'
23768 3' -47.1 NC_005261.1 + 124453 0.67 0.999183
Target:  5'- aGCCGgGGCCGGGUgcccucAGGGGCGc -3'
miRNA:   3'- cUGGUgUCGGCUCAaacuu-UUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 5286 0.67 0.999183
Target:  5'- cGGCCGCGGUgcgcgCGGGUcccUGGAGAGGAgGa -3'
miRNA:   3'- -CUGGUGUCG-----GCUCAa--ACUUUUCUUgC- -5'
23768 3' -47.1 NC_005261.1 + 135222 0.67 0.999073
Target:  5'- gGGCCACGGCCGAGcgcgucgccgccgucUUUGc---GGGCGc -3'
miRNA:   3'- -CUGGUGUCGGCUC---------------AAACuuuuCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 29434 0.67 0.998993
Target:  5'- -cCCGCGGCCGuGUUcgUGccGGAGAugGg -3'
miRNA:   3'- cuGGUGUCGGCuCAA--ACu-UUUCUugC- -5'
23768 3' -47.1 NC_005261.1 + 74973 0.67 0.998972
Target:  5'- aGGCCGCGcgcccgcGCCGGGUgcaGAucgccAAGAACGa -3'
miRNA:   3'- -CUGGUGU-------CGGCUCAaa-CUu----UUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 58288 0.68 0.998497
Target:  5'- gGGCCgGCGcGCCGGGgggcgcggGGAGGGGGCGg -3'
miRNA:   3'- -CUGG-UGU-CGGCUCaaa-----CUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 30424 0.68 0.998181
Target:  5'- cACCGCGGgCGGaccugGAGGAGGACGg -3'
miRNA:   3'- cUGGUGUCgGCUcaaa-CUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 31558 0.68 0.99781
Target:  5'- cGCCugGGCCGGGUccUGGAc-GGGCGc -3'
miRNA:   3'- cUGGugUCGGCUCAa-ACUUuuCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 15928 0.68 0.997377
Target:  5'- gGGCCGgGGCCGGGgcccgGgcAGGAGCc -3'
miRNA:   3'- -CUGGUgUCGGCUCaaa--CuuUUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 29061 0.69 0.996298
Target:  5'- cGCCGCGGCCGAcacUGGAuuuAGGGACu -3'
miRNA:   3'- cUGGUGUCGGCUcaaACUU---UUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 38622 0.69 0.996108
Target:  5'- uGGCCGCGGCCGAgcccgccgccgacgGUgacggUGAAAGcGGCGg -3'
miRNA:   3'- -CUGGUGUCGGCU--------------CAa----ACUUUUcUUGC- -5'
23768 3' -47.1 NC_005261.1 + 135588 0.69 0.995635
Target:  5'- uGGCCACGGCCGGcgccGUgcu-GGAGAACc -3'
miRNA:   3'- -CUGGUGUCGGCU----CAaacuUUUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 77761 0.69 0.995635
Target:  5'- --aCGCAGCCGGGgc-GGcgGGGACGa -3'
miRNA:   3'- cugGUGUCGGCUCaaaCUuuUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 74341 0.69 0.995635
Target:  5'- aGACCGCAGgCGcGgcggcGGAAGGGGCGg -3'
miRNA:   3'- -CUGGUGUCgGCuCaaa--CUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 137112 0.69 0.994878
Target:  5'- gGACCcgcGCGGCgGcGUUuugUGGAAGGAGCGa -3'
miRNA:   3'- -CUGG---UGUCGgCuCAA---ACUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 128886 0.69 0.994018
Target:  5'- aGGCgGgGGCCGGGUggGAGgcGGGCGu -3'
miRNA:   3'- -CUGgUgUCGGCUCAaaCUUuuCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 77218 0.7 0.993046
Target:  5'- -cCCGCuGGCCGGGg--GGGAGGAGCc -3'
miRNA:   3'- cuGGUG-UCGGCUCaaaCUUUUCUUGc -5'
23768 3' -47.1 NC_005261.1 + 77242 0.7 0.989355
Target:  5'- aGAgCGCAGCCGGGcuc-AAAAGGGCGc -3'
miRNA:   3'- -CUgGUGUCGGCUCaaacUUUUCUUGC- -5'
23768 3' -47.1 NC_005261.1 + 44847 0.7 0.987832
Target:  5'- aGCCGCAGCCGcAGccgcGAGgAAGAGCGc -3'
miRNA:   3'- cUGGUGUCGGC-UCaaa-CUU-UUCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.