miRNA display CGI


Results 21 - 40 of 343 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23768 5' -62.8 NC_005261.1 + 49078 0.66 0.637369
Target:  5'- aGCGGGCacgCGccGCGGgCCCGcugaGCGCGCGc -3'
miRNA:   3'- cCGCUUGa--GC--CGCCaGGGC----CGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 73095 0.66 0.637369
Target:  5'- aGGCGuuGCgcaCGGCGGccagaaagCCCGcgucCGCGCGg -3'
miRNA:   3'- -CCGCu-UGa--GCCGCCa-------GGGCc---GCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 109748 0.66 0.637369
Target:  5'- uGCGAAUgCGGC--UCCCGGcCGcCGCGu -3'
miRNA:   3'- cCGCUUGaGCCGccAGGGCC-GC-GCGC- -5'
23768 5' -62.8 NC_005261.1 + 2751 0.66 0.637369
Target:  5'- cGGCGGGCcgucgCGGCGGgCCUcgaGGCcCGCc -3'
miRNA:   3'- -CCGCUUGa----GCCGCCaGGG---CCGcGCGc -5'
23768 5' -62.8 NC_005261.1 + 12304 0.66 0.637369
Target:  5'- cGCGGGCacgGGCGcGUagCCGGCGgGCGc -3'
miRNA:   3'- cCGCUUGag-CCGC-CAg-GGCCGCgCGC- -5'
23768 5' -62.8 NC_005261.1 + 59485 0.66 0.636399
Target:  5'- cGGCGcggccgccgcgccAGCggCGGCGGUCgCacGCGCGCc -3'
miRNA:   3'- -CCGC-------------UUGa-GCCGCCAGgGc-CGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 50930 0.66 0.63446
Target:  5'- gGGCGcggGGCUccccugcuucuacgCGGCcguGGUCgacuaCGGCGCGCGa -3'
miRNA:   3'- -CCGC---UUGA--------------GCCG---CCAGg----GCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 131867 0.66 0.63446
Target:  5'- cGGCugcuuGAGCU-GGCGG-CCgccgccgcacgcgaCGGCGCGCa -3'
miRNA:   3'- -CCG-----CUUGAgCCGCCaGG--------------GCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 58457 0.66 0.63446
Target:  5'- cGCGuacGACUCGcCGGgcgCguaugagccgcaggCCGGCGCGCGg -3'
miRNA:   3'- cCGC---UUGAGCcGCCa--G--------------GGCCGCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 127384 0.66 0.627673
Target:  5'- uGGCGg---CGGCGaGgagCCCGGCGCccucGCa -3'
miRNA:   3'- -CCGCuugaGCCGC-Ca--GGGCCGCG----CGc -5'
23768 5' -62.8 NC_005261.1 + 1282 0.66 0.627673
Target:  5'- cGGCGcccaGGC-CGGCGGggcucccgUCgCCGGCG-GCGg -3'
miRNA:   3'- -CCGC----UUGaGCCGCC--------AG-GGCCGCgCGC- -5'
23768 5' -62.8 NC_005261.1 + 79867 0.66 0.627673
Target:  5'- gGGuUGAGCUUGGCcgccucGG-CCCacagGGCGCGCu -3'
miRNA:   3'- -CC-GCUUGAGCCG------CCaGGG----CCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 18949 0.66 0.627673
Target:  5'- aGGCGGgguGCUCcgcagcucaguGGCGGUgg-GGCGCGCa -3'
miRNA:   3'- -CCGCU---UGAG-----------CCGCCAgggCCGCGCGc -5'
23768 5' -62.8 NC_005261.1 + 121381 0.66 0.627673
Target:  5'- aGGCGccccGCggCGGCGGcgccugCCCGaGUGCGaCGg -3'
miRNA:   3'- -CCGCu---UGa-GCCGCCa-----GGGC-CGCGC-GC- -5'
23768 5' -62.8 NC_005261.1 + 88767 0.66 0.627673
Target:  5'- cGGCGcugcgcucCUCGGCccuGGcCgCCGGCGcCGCGc -3'
miRNA:   3'- -CCGCuu------GAGCCG---CCaG-GGCCGC-GCGC- -5'
23768 5' -62.8 NC_005261.1 + 66364 0.66 0.627673
Target:  5'- cGCGAGCUC-GCGc-CCCGGCGCc-- -3'
miRNA:   3'- cCGCUUGAGcCGCcaGGGCCGCGcgc -5'
23768 5' -62.8 NC_005261.1 + 61222 0.66 0.627673
Target:  5'- uGCGAucgcGCUCGGCG--UUCGGCGCGa- -3'
miRNA:   3'- cCGCU----UGAGCCGCcaGGGCCGCGCgc -5'
23768 5' -62.8 NC_005261.1 + 118639 0.66 0.627673
Target:  5'- cGGCGGcGCUCuG-GGcCCCGGgcCGCGCGc -3'
miRNA:   3'- -CCGCU-UGAGcCgCCaGGGCC--GCGCGC- -5'
23768 5' -62.8 NC_005261.1 + 134549 0.66 0.627673
Target:  5'- cGUGAccgccccuuGCUgGGCGGcgCCgCGGCuGCGCa -3'
miRNA:   3'- cCGCU---------UGAgCCGCCa-GG-GCCG-CGCGc -5'
23768 5' -62.8 NC_005261.1 + 79042 0.66 0.627673
Target:  5'- cGCGccCUUGGCGucGUCCuUGaGCGCGCGc -3'
miRNA:   3'- cCGCuuGAGCCGC--CAGG-GC-CGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.