miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23769 3' -53 NC_005261.1 + 135588 0.66 0.976469
Target:  5'- uGGCc-ACGGCCGGCgcc--GUGCUGGa -3'
miRNA:   3'- -CCGacUGCUGGUCGaccaaCAUGACC- -5'
23769 3' -53 NC_005261.1 + 37190 0.66 0.976469
Target:  5'- uGCUGGCGGCgCuGCUGGcgGcgcUACUGu -3'
miRNA:   3'- cCGACUGCUG-GuCGACCaaC---AUGACc -5'
23769 3' -53 NC_005261.1 + 88733 0.66 0.973865
Target:  5'- cGCgaUGAgGGCCAGCUGGUgg-ACgccaUGGu -3'
miRNA:   3'- cCG--ACUgCUGGUCGACCAacaUG----ACC- -5'
23769 3' -53 NC_005261.1 + 30773 0.66 0.973865
Target:  5'- gGGCcgGAgccCGGCCgcGGC-GGUggagGUGCUGGg -3'
miRNA:   3'- -CCGa-CU---GCUGG--UCGaCCAa---CAUGACC- -5'
23769 3' -53 NC_005261.1 + 14932 0.66 0.971059
Target:  5'- aGGaucGACG-CCAGCUGGc---GCUGGa -3'
miRNA:   3'- -CCga-CUGCuGGUCGACCaacaUGACC- -5'
23769 3' -53 NC_005261.1 + 23914 0.66 0.968043
Target:  5'- gGGCUG--GGCCAGCUGGggUGgGCUc- -3'
miRNA:   3'- -CCGACugCUGGUCGACCa-ACaUGAcc -5'
23769 3' -53 NC_005261.1 + 5883 0.66 0.966776
Target:  5'- aGGCUGGCuGGCuCGGCUGGcuagcucggccgGccgGCUGGc -3'
miRNA:   3'- -CCGACUG-CUG-GUCGACCaa----------Ca--UGACC- -5'
23769 3' -53 NC_005261.1 + 20676 0.66 0.96481
Target:  5'- cGGCagaGugGAUCAGCgUGGUUGacggcuacaaccUGCUGa -3'
miRNA:   3'- -CCGa--CugCUGGUCG-ACCAAC------------AUGACc -5'
23769 3' -53 NC_005261.1 + 127492 0.66 0.961355
Target:  5'- cGCUGGCGGCUgccuGCcGGgcGUACUcGGc -3'
miRNA:   3'- cCGACUGCUGGu---CGaCCaaCAUGA-CC- -5'
23769 3' -53 NC_005261.1 + 97153 0.67 0.953755
Target:  5'- cGCUGGCG-CCGGCccGGccg-GCUGGg -3'
miRNA:   3'- cCGACUGCuGGUCGa-CCaacaUGACC- -5'
23769 3' -53 NC_005261.1 + 97231 0.67 0.953755
Target:  5'- cGCUGGCG-CCGGCccGGccg-GCUGGg -3'
miRNA:   3'- cCGACUGCuGGUCGa-CCaacaUGACC- -5'
23769 3' -53 NC_005261.1 + 80644 0.67 0.940566
Target:  5'- cGCUccGGCGAgUAGCUGG-UGUGCUcgcGGu -3'
miRNA:   3'- cCGA--CUGCUgGUCGACCaACAUGA---CC- -5'
23769 3' -53 NC_005261.1 + 45283 0.68 0.930547
Target:  5'- uGCUGcCGuACCGGCUGGccUUGUACc-- -3'
miRNA:   3'- cCGACuGC-UGGUCGACC--AACAUGacc -5'
23769 3' -53 NC_005261.1 + 137831 0.69 0.887693
Target:  5'- gGGCUGGCagGGCUGGCgGaGUUGgcgggGCUGGc -3'
miRNA:   3'- -CCGACUG--CUGGUCGaC-CAACa----UGACC- -5'
23769 3' -53 NC_005261.1 + 148 0.69 0.887693
Target:  5'- gGGCUGGCagGGCUGGCgGaGUUGgcgggGCUGGc -3'
miRNA:   3'- -CCGACUG--CUGGUCGaC-CAACa----UGACC- -5'
23769 3' -53 NC_005261.1 + 5942 0.71 0.824892
Target:  5'- aGGCUGGCuagcuaGGCCGGCUGGcUGgcuaGCUcGGc -3'
miRNA:   3'- -CCGACUG------CUGGUCGACCaACa---UGA-CC- -5'
23769 3' -53 NC_005261.1 + 61034 0.71 0.807219
Target:  5'- cGGCaccGCGG-CAGCUGGcugGUGCUGGg -3'
miRNA:   3'- -CCGac-UGCUgGUCGACCaa-CAUGACC- -5'
23769 3' -53 NC_005261.1 + 79373 0.72 0.750531
Target:  5'- aGCU--CGugCAGCUGGUUGcggcGCUGGa -3'
miRNA:   3'- cCGAcuGCugGUCGACCAACa---UGACC- -5'
23769 3' -53 NC_005261.1 + 38595 0.73 0.679617
Target:  5'- uGCUGGCGGCCcgcGGCUGGcggGUGUUGGc -3'
miRNA:   3'- cCGACUGCUGG---UCGACCaa-CAUGACC- -5'
23769 3' -53 NC_005261.1 + 98016 0.75 0.585896
Target:  5'- cGCUGGCGGCgaGGCUGGagacgccgcgGUACUGGc -3'
miRNA:   3'- cCGACUGCUGg-UCGACCaa--------CAUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.