miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23769 5' -56.7 NC_005261.1 + 57657 0.66 0.876023
Target:  5'- gCACGcccccgagacUGCGCG-AG-CGCCaGCCGGCGg -3'
miRNA:   3'- -GUGC----------AUGUGUaUCaGCGGcCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 38283 0.66 0.876023
Target:  5'- gCugGUGCACGcGGU-GCUGGCCcGCc -3'
miRNA:   3'- -GugCAUGUGUaUCAgCGGCCGGcCGu -5'
23769 5' -56.7 NC_005261.1 + 25187 0.66 0.876023
Target:  5'- uCACGUGgGCcUGGgccUCGCUgcgauuGGCCGGCc -3'
miRNA:   3'- -GUGCAUgUGuAUC---AGCGG------CCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 40673 0.66 0.876023
Target:  5'- cCGCG-ACGCcgucgGGgagccggCGCCGGCCGGg- -3'
miRNA:   3'- -GUGCaUGUGua---UCa------GCGGCCGGCCgu -5'
23769 5' -56.7 NC_005261.1 + 66030 0.66 0.876023
Target:  5'- gCGCGU---CGUAGUCGgCGGCCacGGCc -3'
miRNA:   3'- -GUGCAuguGUAUCAGCgGCCGG--CCGu -5'
23769 5' -56.7 NC_005261.1 + 67635 0.66 0.87385
Target:  5'- cCACGUACGCcgAGaaCGCgGGCCgcccguccgcgcgcGGCGc -3'
miRNA:   3'- -GUGCAUGUGuaUCa-GCGgCCGG--------------CCGU- -5'
23769 5' -56.7 NC_005261.1 + 79545 0.66 0.871657
Target:  5'- gCACGUACGCGUAGUUcucguaguacacguaGuCCGcGCCGaaGCGg -3'
miRNA:   3'- -GUGCAUGUGUAUCAG---------------C-GGC-CGGC--CGU- -5'
23769 5' -56.7 NC_005261.1 + 133129 0.66 0.871657
Target:  5'- gGCGUGCGCGUcucccugcggugcgcGcUCGCCGccGUCGGCGu -3'
miRNA:   3'- gUGCAUGUGUA---------------UcAGCGGC--CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 84048 0.66 0.871657
Target:  5'- aAUGUGCGCAgaaaUGGUCuuuuuauuuuuuguuGCCGGCaCGcGCAu -3'
miRNA:   3'- gUGCAUGUGU----AUCAG---------------CGGCCG-GC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 68679 0.66 0.868703
Target:  5'- gGCGUccgcCGCGUGGggGCCGGCgCGGaCGa -3'
miRNA:   3'- gUGCAu---GUGUAUCagCGGCCG-GCC-GU- -5'
23769 5' -56.7 NC_005261.1 + 109473 0.66 0.868703
Target:  5'- gCGCGUGCGCGcccgAG-CGCaaauGGCCGGg- -3'
miRNA:   3'- -GUGCAUGUGUa---UCaGCGg---CCGGCCgu -5'
23769 5' -56.7 NC_005261.1 + 127287 0.66 0.868703
Target:  5'- cCGCGgGgGCAgcccucccCGCCGGCUGGCGg -3'
miRNA:   3'- -GUGCaUgUGUauca----GCGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 45545 0.66 0.866465
Target:  5'- gCAC-UACGCu--GUUGCCcggcugcugcuggcGGCCGGCAa -3'
miRNA:   3'- -GUGcAUGUGuauCAGCGG--------------CCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 10442 0.66 0.864209
Target:  5'- aCGCGUGCugGgAGgcgcugcugcagcucUCGCCcgagcaGGCCGGCc -3'
miRNA:   3'- -GUGCAUGugUaUC---------------AGCGG------CCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 121229 0.66 0.86117
Target:  5'- aGCac-CGCAUGG-CGCCGGCCaGCu -3'
miRNA:   3'- gUGcauGUGUAUCaGCGGCCGGcCGu -5'
23769 5' -56.7 NC_005261.1 + 93655 0.66 0.86117
Target:  5'- cCGCGUACGCccaccGGUcCGCgGGCggCGGCGc -3'
miRNA:   3'- -GUGCAUGUGua---UCA-GCGgCCG--GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 33588 0.66 0.86117
Target:  5'- cCGCGaGCACcagGGgcggCGCCGGCgcgggCGGCGg -3'
miRNA:   3'- -GUGCaUGUGua-UCa---GCGGCCG-----GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 5889 0.66 0.86117
Target:  5'- gCugGcucgGCugGcUAGcUCgGCCGGCCGGCu -3'
miRNA:   3'- -GugCa---UGugU-AUC-AG-CGGCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 76370 0.66 0.860406
Target:  5'- gCGCGUGCACccgcgcuGcCGCCgccaacauaaaaaGGCCGGCc -3'
miRNA:   3'- -GUGCAUGUGuau----CaGCGG-------------CCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 46648 0.66 0.859639
Target:  5'- gUACGUGCACAcGGcgaaguuccgcgCGuuGGCCGcGCGc -3'
miRNA:   3'- -GUGCAUGUGUaUCa-----------GCggCCGGC-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.