Results 21 - 40 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23769 | 5' | -56.7 | NC_005261.1 | + | 59457 | 0.66 | 0.845488 |
Target: 5'- gCGCGgcCGCGgcgucgggGGgcagCGCCGGCgCGGCc -3' miRNA: 3'- -GUGCauGUGUa-------UCa---GCGGCCG-GCCGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 121229 | 0.66 | 0.86117 |
Target: 5'- aGCac-CGCAUGG-CGCCGGCCaGCu -3' miRNA: 3'- gUGcauGUGUAUCaGCGGCCGGcCGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 93655 | 0.66 | 0.86117 |
Target: 5'- cCGCGUACGCccaccGGUcCGCgGGCggCGGCGc -3' miRNA: 3'- -GUGCAUGUGua---UCA-GCGgCCG--GCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 3846 | 0.67 | 0.803015 |
Target: 5'- gGCGgcagcgGCGCcgGcGcCGCgCGGCCGGCGa -3' miRNA: 3'- gUGCa-----UGUGuaU-CaGCG-GCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 118807 | 0.67 | 0.837353 |
Target: 5'- gCACGUGgGCGUcugCGCCcugGGCgCGGCAc -3' miRNA: 3'- -GUGCAUgUGUAucaGCGG---CCG-GCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 106105 | 0.67 | 0.837353 |
Target: 5'- gACGUcgGC-CGgcGUCGCCGGCgcgcgcgcgcCGGCAa -3' miRNA: 3'- gUGCA--UGuGUauCAGCGGCCG----------GCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 70843 | 0.67 | 0.839813 |
Target: 5'- gCGCGUACGCcUccucagguccagggcGGcCGCCguggcguGGCCGGCGg -3' miRNA: 3'- -GUGCAUGUGuA---------------UCaGCGG-------CCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 105123 | 0.67 | 0.811853 |
Target: 5'- gCGCGgGCGCG-GGcCGCCGGCgCGcGCAg -3' miRNA: 3'- -GUGCaUGUGUaUCaGCGGCCG-GC-CGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 88825 | 0.67 | 0.811853 |
Target: 5'- gGCGgcgGCGCg----CGCCGGCCcGGCGu -3' miRNA: 3'- gUGCa--UGUGuaucaGCGGCCGG-CCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 98515 | 0.67 | 0.811853 |
Target: 5'- gGCGUACGgGcAGgcgCGagauCCGGCCGGUAg -3' miRNA: 3'- gUGCAUGUgUaUCa--GC----GGCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 3446 | 0.67 | 0.829029 |
Target: 5'- gGCGgGCGCGcgGGcCGCCGcGCCGcGCGu -3' miRNA: 3'- gUGCaUGUGUa-UCaGCGGC-CGGC-CGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 100817 | 0.67 | 0.794022 |
Target: 5'- gCGCGUGCGCcUGcGcCGCCcaGGCCGGgAg -3' miRNA: 3'- -GUGCAUGUGuAU-CaGCGG--CCGGCCgU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 59268 | 0.67 | 0.794022 |
Target: 5'- aCGCGUcGCACGgcguGUCGCCGcCCaGCAg -3' miRNA: 3'- -GUGCA-UGUGUau--CAGCGGCcGGcCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 76421 | 0.67 | 0.803015 |
Target: 5'- gCGCGUGCAgAg---CGCCGGCgccaUGGCGg -3' miRNA: 3'- -GUGCAUGUgUaucaGCGGCCG----GCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 94348 | 0.67 | 0.803015 |
Target: 5'- gGCGUcgaucguccgGCACAcAG-CGCaCGGCCGGUc -3' miRNA: 3'- gUGCA----------UGUGUaUCaGCG-GCCGGCCGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 75517 | 0.67 | 0.803015 |
Target: 5'- gGCGcACGCcGUGGUCGCCGcGCugcagCGGCu -3' miRNA: 3'- gUGCaUGUG-UAUCAGCGGC-CG-----GCCGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 1479 | 0.67 | 0.811853 |
Target: 5'- gCGCGgccGCGCAgaAGgccacCGCCgcGGCCGGCAg -3' miRNA: 3'- -GUGCa--UGUGUa-UCa----GCGG--CCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 97140 | 0.67 | 0.811853 |
Target: 5'- cCACGcucggagGCGC-UGG-CGCCGGCCcGGCc -3' miRNA: 3'- -GUGCa------UGUGuAUCaGCGGCCGG-CCGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 97218 | 0.67 | 0.811853 |
Target: 5'- cCACGcucggagGCGC-UGG-CGCCGGCCcGGCc -3' miRNA: 3'- -GUGCa------UGUGuAUCaGCGGCCGG-CCGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 82048 | 0.67 | 0.811853 |
Target: 5'- uGCGUcaGCGCGggccacGUCGCCGGgucgaCGGCGu -3' miRNA: 3'- gUGCA--UGUGUau----CAGCGGCCg----GCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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