miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23769 5' -56.7 NC_005261.1 + 75517 0.67 0.803015
Target:  5'- gGCGcACGCcGUGGUCGCCGcGCugcagCGGCu -3'
miRNA:   3'- gUGCaUGUG-UAUCAGCGGC-CG-----GCCGu -5'
23769 5' -56.7 NC_005261.1 + 3846 0.67 0.803015
Target:  5'- gGCGgcagcgGCGCcgGcGcCGCgCGGCCGGCGa -3'
miRNA:   3'- gUGCa-----UGUGuaU-CaGCG-GCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 31394 0.67 0.817942
Target:  5'- gACGUGCGCGUGGUggugcucuacgaccCGCUGcccggggaggcGCUGGCGg -3'
miRNA:   3'- gUGCAUGUGUAUCA--------------GCGGC-----------CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 83004 0.67 0.820527
Target:  5'- -uCGcGCACcgAGcCGCCGucGCCGGCGc -3'
miRNA:   3'- guGCaUGUGuaUCaGCGGC--CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 94606 0.67 0.820527
Target:  5'- cCACGaGCGCGcgcccUCGCCGccGCCGGCGc -3'
miRNA:   3'- -GUGCaUGUGUauc--AGCGGC--CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 70843 0.67 0.839813
Target:  5'- gCGCGUACGCcUccucagguccagggcGGcCGCCguggcguGGCCGGCGg -3'
miRNA:   3'- -GUGCAUGUGuA---------------UCaGCGG-------CCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 106105 0.67 0.837353
Target:  5'- gACGUcgGC-CGgcGUCGCCGGCgcgcgcgcgcCGGCAa -3'
miRNA:   3'- gUGCA--UGuGUauCAGCGGCCG----------GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 118807 0.67 0.837353
Target:  5'- gCACGUGgGCGUcugCGCCcugGGCgCGGCAc -3'
miRNA:   3'- -GUGCAUgUGUAucaGCGG---CCG-GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 73790 0.67 0.837353
Target:  5'- gACGUGCGCg----CGgCGGUCGGCGc -3'
miRNA:   3'- gUGCAUGUGuaucaGCgGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 84130 0.67 0.829029
Target:  5'- aGCGg--GCGgGGUCGCUGGCgGGCc -3'
miRNA:   3'- gUGCaugUGUaUCAGCGGCCGgCCGu -5'
23769 5' -56.7 NC_005261.1 + 48442 0.67 0.829029
Target:  5'- uCGCGgu-GCGUGG-CG-CGGCCGGCGc -3'
miRNA:   3'- -GUGCaugUGUAUCaGCgGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 21784 0.67 0.829029
Target:  5'- cCGCG-GCGCGggccgccgcAGcCGCCGGCCGGg- -3'
miRNA:   3'- -GUGCaUGUGUa--------UCaGCGGCCGGCCgu -5'
23769 5' -56.7 NC_005261.1 + 94348 0.67 0.803015
Target:  5'- gGCGUcgaucguccgGCACAcAG-CGCaCGGCCGGUc -3'
miRNA:   3'- gUGCA----------UGUGUaUCaGCG-GCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 57849 0.67 0.821385
Target:  5'- gCGCGggcggcaaggccucgGCGCucgGGUCgggaaGUCGGCCGGCAc -3'
miRNA:   3'- -GUGCa--------------UGUGua-UCAG-----CGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 43174 0.67 0.829029
Target:  5'- gCGCG-AUACGgcGcCGCCGGCgaGGCAg -3'
miRNA:   3'- -GUGCaUGUGUauCaGCGGCCGg-CCGU- -5'
23769 5' -56.7 NC_005261.1 + 109332 0.68 0.784882
Target:  5'- gCGCGgcCGCGgGGUCGgCGGCCGcGUc -3'
miRNA:   3'- -GUGCauGUGUaUCAGCgGCCGGC-CGu -5'
23769 5' -56.7 NC_005261.1 + 118927 0.68 0.775605
Target:  5'- cCGCGgGCGCGgcGcCGCgCGGCUGGCc -3'
miRNA:   3'- -GUGCaUGUGUauCaGCG-GCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 98843 0.68 0.775605
Target:  5'- gGCGUACAgcgGGUCGCCGcuugcGgCGGCGa -3'
miRNA:   3'- gUGCAUGUguaUCAGCGGC-----CgGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 19084 0.68 0.77467
Target:  5'- gCGCGUGCuugcgugGCGUuggaaguugcgGGUCaGCCGGUCGGUg -3'
miRNA:   3'- -GUGCAUG-------UGUA-----------UCAG-CGGCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 14976 0.68 0.766199
Target:  5'- gGCGacUGCGCGgccgCGCCGGCCGcGCc -3'
miRNA:   3'- gUGC--AUGUGUaucaGCGGCCGGC-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.