miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23769 5' -56.7 NC_005261.1 + 59416 0.7 0.63639
Target:  5'- gGCGccgGCGCu--GUCGCgCGGCCcGGCAg -3'
miRNA:   3'- gUGCa--UGUGuauCAGCG-GCCGG-CCGU- -5'
23769 5' -56.7 NC_005261.1 + 64169 0.7 0.63639
Target:  5'- uCGCGUGCAgGUGGUC-CgGGCaGGCGa -3'
miRNA:   3'- -GUGCAUGUgUAUCAGcGgCCGgCCGU- -5'
23769 5' -56.7 NC_005261.1 + 126821 0.7 0.646637
Target:  5'- uGCGUACAgGUcugCGuuGGUCGGCAg -3'
miRNA:   3'- gUGCAUGUgUAucaGCggCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 131195 0.7 0.646637
Target:  5'- cCGCG-GCGC--GGUCGCC-GCCGGCGc -3'
miRNA:   3'- -GUGCaUGUGuaUCAGCGGcCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 50373 0.7 0.667087
Target:  5'- uCACGUagcuccGCGCGUcgaaguacGUCGCgaaGGCCGGCAg -3'
miRNA:   3'- -GUGCA------UGUGUAu-------CAGCGg--CCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 42812 0.7 0.667087
Target:  5'- gACGUcCGCGgccgCGCCGGCCGGa- -3'
miRNA:   3'- gUGCAuGUGUaucaGCGGCCGGCCgu -5'
23769 5' -56.7 NC_005261.1 + 131092 0.7 0.677274
Target:  5'- cCACGUACGCc--GUCGCCGcGCCGc-- -3'
miRNA:   3'- -GUGCAUGUGuauCAGCGGC-CGGCcgu -5'
23769 5' -56.7 NC_005261.1 + 53561 0.7 0.677274
Target:  5'- cCGCGgcccagGCGCAcUAGcggcCGCgGGCCGGCGg -3'
miRNA:   3'- -GUGCa-----UGUGU-AUCa---GCGgCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 15208 0.7 0.677274
Target:  5'- uCGCGcGguCGUAGaggcUCGCCGaGCCGGCGu -3'
miRNA:   3'- -GUGCaUguGUAUC----AGCGGC-CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 69493 0.7 0.677274
Target:  5'- gCugGUGCACcu-GUaCGCCGG-CGGCGg -3'
miRNA:   3'- -GugCAUGUGuauCA-GCGGCCgGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 21406 0.7 0.677274
Target:  5'- uGCGUuccCGCGccG-CGCCGGCCGGUg -3'
miRNA:   3'- gUGCAu--GUGUauCaGCGGCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 48747 0.7 0.677274
Target:  5'- gCAC-UGCGCGUAGUCGCgcccccCGGgCGGCc -3'
miRNA:   3'- -GUGcAUGUGUAUCAGCG------GCCgGCCGu -5'
23769 5' -56.7 NC_005261.1 + 47999 0.69 0.687423
Target:  5'- gGCGU-CGCAgccgccGUCGCCccGCCGGCAg -3'
miRNA:   3'- gUGCAuGUGUau----CAGCGGc-CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 60390 0.69 0.697527
Target:  5'- gAgGUGCGCcuccAUGG-CGCCgGGCCGGCc -3'
miRNA:   3'- gUgCAUGUG----UAUCaGCGG-CCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 85010 0.69 0.727471
Target:  5'- gACGgcCGCGgGGUCGCgCGGCCGccGCGc -3'
miRNA:   3'- gUGCauGUGUaUCAGCG-GCCGGC--CGU- -5'
23769 5' -56.7 NC_005261.1 + 56527 0.69 0.727471
Target:  5'- cCGCGUucguCGCGcGGUUcaGCCGGCUGGUg -3'
miRNA:   3'- -GUGCAu---GUGUaUCAG--CGGCCGGCCGu -5'
23769 5' -56.7 NC_005261.1 + 87750 0.68 0.7373
Target:  5'- gACGUACACGaAGccCGCgGGCCcuGGCGc -3'
miRNA:   3'- gUGCAUGUGUaUCa-GCGgCCGG--CCGU- -5'
23769 5' -56.7 NC_005261.1 + 109202 0.68 0.7373
Target:  5'- gGCGUGCGCAggcgcUCGuaGGCgCGGCAc -3'
miRNA:   3'- gUGCAUGUGUauc--AGCggCCG-GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 71987 0.68 0.747037
Target:  5'- gCAgGUGCGCAgcGUCGCCccuGGCCuuaacgccgggGGCGa -3'
miRNA:   3'- -GUgCAUGUGUauCAGCGG---CCGG-----------CCGU- -5'
23769 5' -56.7 NC_005261.1 + 17842 0.68 0.747037
Target:  5'- gGCGUucCGCAgGGcCucguaagagcgGCCGGCCGGCAg -3'
miRNA:   3'- gUGCAu-GUGUaUCaG-----------CGGCCGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.