Results 41 - 60 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23769 | 5' | -56.7 | NC_005261.1 | + | 17842 | 0.68 | 0.747037 |
Target: 5'- gGCGUucCGCAgGGcCucguaagagcgGCCGGCCGGCAg -3' miRNA: 3'- gUGCAu-GUGUaUCaG-----------CGGCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 74169 | 0.68 | 0.747037 |
Target: 5'- gCGCGUGCuCAaGGUgacgCGCCuGCCGGCu -3' miRNA: 3'- -GUGCAUGuGUaUCA----GCGGcCGGCCGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 110930 | 0.68 | 0.756673 |
Target: 5'- cCGCGcuggGCACcgAG-CGCCGcCCGGCGg -3' miRNA: 3'- -GUGCa---UGUGuaUCaGCGGCcGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 124089 | 0.68 | 0.756673 |
Target: 5'- gGCGccCGCGUAGcgcgCGCacagGGCCGGCAc -3' miRNA: 3'- gUGCauGUGUAUCa---GCGg---CCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 55410 | 0.68 | 0.756673 |
Target: 5'- gCAUcUACGCGcg--CGCCGGCUGGCGc -3' miRNA: 3'- -GUGcAUGUGUaucaGCGGCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 3655 | 0.68 | 0.756673 |
Target: 5'- gCGCGUcuggaGCGCA-GGcCG-CGGCCGGCAg -3' miRNA: 3'- -GUGCA-----UGUGUaUCaGCgGCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 75620 | 0.68 | 0.765252 |
Target: 5'- gGCGU-CGCGUAcGUggacgacguccacCGCgCGGCCGGCGc -3' miRNA: 3'- gUGCAuGUGUAU-CA-------------GCG-GCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 14976 | 0.68 | 0.766199 |
Target: 5'- gGCGacUGCGCGgccgCGCCGGCCGcGCc -3' miRNA: 3'- gUGC--AUGUGUaucaGCGGCCGGC-CGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 19084 | 0.68 | 0.77467 |
Target: 5'- gCGCGUGCuugcgugGCGUuggaaguugcgGGUCaGCCGGUCGGUg -3' miRNA: 3'- -GUGCAUG-------UGUA-----------UCAG-CGGCCGGCCGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 98843 | 0.68 | 0.775605 |
Target: 5'- gGCGUACAgcgGGUCGCCGcuugcGgCGGCGa -3' miRNA: 3'- gUGCAUGUguaUCAGCGGC-----CgGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 118927 | 0.68 | 0.775605 |
Target: 5'- cCGCGgGCGCGgcGcCGCgCGGCUGGCc -3' miRNA: 3'- -GUGCaUGUGUauCaGCG-GCCGGCCGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 121768 | 0.68 | 0.784882 |
Target: 5'- -cCGaGCGCGguggGGUgGCCgcGGCCGGCGg -3' miRNA: 3'- guGCaUGUGUa---UCAgCGG--CCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 109332 | 0.68 | 0.784882 |
Target: 5'- gCGCGgcCGCGgGGUCGgCGGCCGcGUc -3' miRNA: 3'- -GUGCauGUGUaUCAGCgGCCGGC-CGu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 14223 | 0.67 | 0.794022 |
Target: 5'- aACGcGCGCGgugaAGaccgCGCCGGCCGGg- -3' miRNA: 3'- gUGCaUGUGUa---UCa---GCGGCCGGCCgu -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 34924 | 0.67 | 0.794022 |
Target: 5'- gCGCGgcCACGcGGggGgCGGCCGGCGc -3' miRNA: 3'- -GUGCauGUGUaUCagCgGCCGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 64300 | 0.67 | 0.794022 |
Target: 5'- aGCGUGCGCAUGuuucgcGUCG-CGGCCGuaGc -3' miRNA: 3'- gUGCAUGUGUAU------CAGCgGCCGGCcgU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 100817 | 0.67 | 0.794022 |
Target: 5'- gCGCGUGCGCcUGcGcCGCCcaGGCCGGgAg -3' miRNA: 3'- -GUGCAUGUGuAU-CaGCGG--CCGGCCgU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 125930 | 0.67 | 0.794022 |
Target: 5'- cCACGcGCACgGUAGcCGCUGGCgcggggucgcaCGGCAg -3' miRNA: 3'- -GUGCaUGUG-UAUCaGCGGCCG-----------GCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 3376 | 0.67 | 0.794022 |
Target: 5'- cCGCGaGCGCGgccgccaGCCGcGCCGGCAc -3' miRNA: 3'- -GUGCaUGUGUaucag--CGGC-CGGCCGU- -5' |
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23769 | 5' | -56.7 | NC_005261.1 | + | 59268 | 0.67 | 0.794022 |
Target: 5'- aCGCGUcGCACGgcguGUCGCCGcCCaGCAg -3' miRNA: 3'- -GUGCA-UGUGUau--CAGCGGCcGGcCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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