miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23769 5' -56.7 NC_005261.1 + 90376 0.66 0.85343
Target:  5'- -uCGUGCGCGgcgAGgcccCGCCGGCgGGg- -3'
miRNA:   3'- guGCAUGUGUa--UCa---GCGGCCGgCCgu -5'
23769 5' -56.7 NC_005261.1 + 29774 0.66 0.848688
Target:  5'- gCGCGUACGCGcccauggccuacccGGagGCCGGCgcCGGCGg -3'
miRNA:   3'- -GUGCAUGUGUa-------------UCagCGGCCG--GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 59457 0.66 0.845488
Target:  5'- gCGCGgcCGCGgcgucgggGGgcagCGCCGGCgCGGCc -3'
miRNA:   3'- -GUGCauGUGUa-------UCa---GCGGCCG-GCCGu -5'
23769 5' -56.7 NC_005261.1 + 70843 0.67 0.839813
Target:  5'- gCGCGUACGCcUccucagguccagggcGGcCGCCguggcguGGCCGGCGg -3'
miRNA:   3'- -GUGCAUGUGuA---------------UCaGCGG-------CCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 106105 0.67 0.837353
Target:  5'- gACGUcgGC-CGgcGUCGCCGGCgcgcgcgcgcCGGCAa -3'
miRNA:   3'- gUGCA--UGuGUauCAGCGGCCG----------GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 73790 0.67 0.837353
Target:  5'- gACGUGCGCg----CGgCGGUCGGCGc -3'
miRNA:   3'- gUGCAUGUGuaucaGCgGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 118807 0.67 0.837353
Target:  5'- gCACGUGgGCGUcugCGCCcugGGCgCGGCAc -3'
miRNA:   3'- -GUGCAUgUGUAucaGCGG---CCG-GCCGU- -5'
23769 5' -56.7 NC_005261.1 + 48442 0.67 0.829029
Target:  5'- uCGCGgu-GCGUGG-CG-CGGCCGGCGc -3'
miRNA:   3'- -GUGCaugUGUAUCaGCgGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 21784 0.67 0.829029
Target:  5'- cCGCG-GCGCGggccgccgcAGcCGCCGGCCGGg- -3'
miRNA:   3'- -GUGCaUGUGUa--------UCaGCGGCCGGCCgu -5'
23769 5' -56.7 NC_005261.1 + 43174 0.67 0.829029
Target:  5'- gCGCG-AUACGgcGcCGCCGGCgaGGCAg -3'
miRNA:   3'- -GUGCaUGUGUauCaGCGGCCGg-CCGU- -5'
23769 5' -56.7 NC_005261.1 + 3446 0.67 0.829029
Target:  5'- gGCGgGCGCGcgGGcCGCCGcGCCGcGCGu -3'
miRNA:   3'- gUGCaUGUGUa-UCaGCGGC-CGGC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 84130 0.67 0.829029
Target:  5'- aGCGg--GCGgGGUCGCUGGCgGGCc -3'
miRNA:   3'- gUGCaugUGUaUCAGCGGCCGgCCGu -5'
23769 5' -56.7 NC_005261.1 + 57849 0.67 0.821385
Target:  5'- gCGCGggcggcaaggccucgGCGCucgGGUCgggaaGUCGGCCGGCAc -3'
miRNA:   3'- -GUGCa--------------UGUGua-UCAG-----CGGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 83004 0.67 0.820527
Target:  5'- -uCGcGCACcgAGcCGCCGucGCCGGCGc -3'
miRNA:   3'- guGCaUGUGuaUCaGCGGC--CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 94606 0.67 0.820527
Target:  5'- cCACGaGCGCGcgcccUCGCCGccGCCGGCGc -3'
miRNA:   3'- -GUGCaUGUGUauc--AGCGGC--CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 31394 0.67 0.817942
Target:  5'- gACGUGCGCGUGGUggugcucuacgaccCGCUGcccggggaggcGCUGGCGg -3'
miRNA:   3'- gUGCAUGUGUAUCA--------------GCGGC-----------CGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 105123 0.67 0.811853
Target:  5'- gCGCGgGCGCG-GGcCGCCGGCgCGcGCAg -3'
miRNA:   3'- -GUGCaUGUGUaUCaGCGGCCG-GC-CGU- -5'
23769 5' -56.7 NC_005261.1 + 88825 0.67 0.811853
Target:  5'- gGCGgcgGCGCg----CGCCGGCCcGGCGu -3'
miRNA:   3'- gUGCa--UGUGuaucaGCGGCCGG-CCGU- -5'
23769 5' -56.7 NC_005261.1 + 98515 0.67 0.811853
Target:  5'- gGCGUACGgGcAGgcgCGagauCCGGCCGGUAg -3'
miRNA:   3'- gUGCAUGUgUaUCa--GC----GGCCGGCCGU- -5'
23769 5' -56.7 NC_005261.1 + 82048 0.67 0.811853
Target:  5'- uGCGUcaGCGCGggccacGUCGCCGGgucgaCGGCGu -3'
miRNA:   3'- gUGCA--UGUGUau----CAGCGGCCg----GCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.